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Protein Overview: SPT4H_DANRE

General Information:
Name(s) found: SPT4H_DANRE [Swiss-Prot]
Description(s) found:
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  • gi|82183088|sp|Q6DGQ0.1|SPT4H_DANRE RecName: Full=Transcription elongation factor SPT4; AltName: Full=DRB sensitivity-inducing factor small subunit; Short=DSIF small subunit [NCBI NR]
  • gi|50540088|ref|NP_001002509.1| suppressor of Ty 4 homolog 1 [Danio rerio] [NCBI NR]
  • gi|49904576|gb|AAH76290.1| Zgc:92824 protein [Danio rerio] [NCBI NR]
  • gi|125870616|ref|XP_001332367.1| PREDICTED: hypothetical protein LOC436782 [Danio rerio] [NCBI NR]
  • Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1 [Swiss-Prot]
  • Transcription elongation factor SPT4 (DRB sensitivity-inducing factor small subunit) (DSIF small subunit) - Brachydanio rerio (Zebrafish) (Danio rerio) [Swiss-Prot]
  • zgc:92824 [071204_hmrz_cont.fasta]
  • zgc:92824 [Danio rerio]gi|49904576|gb|AAH76290.1| Zgc:92824 [Danio rerio] [nrdb_11152004_Chlamydomonas]
  • Transcription elongation factor SPT4 (DRB sensitivity-inducing factor small subunit) (DSIF small subunit) [nr-271106-contam.fasta]
  • Zgc:92824 protein [Danio rerio] [nr-271106-contam.fasta]
  • transcription elongation factor SPT4 [Danio rerio] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • RecName: Full=Transcription elongation factor SPT4; AltName: Full=DRB sensitivity-inducing factor small subunit; Short=DSIF small subunit [NCBI_RefSeq_D_rerio_20120531_05-31-2012_reversed.fasta]
    • Organism: Danio rerio
    Length: 117 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: transcription [IEA]
    positive regulation of transcription [IEA]
    regulation of transcription [IEA]
    Molecular Function: zinc ion binding [IEA]
    metal ion binding [IEA]
    positive transcription elongation factor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLETVPKDL RHLRACLLCS LVKTIDQFEY DGCDNCESYL QMKGNREMVY ECTSSSFDGV  60
   61 IAMMSPEDSW VAKWQRIGNF KPGVYAVTVT GRLPPGVVRE LKSRGVIYRS RDTAVKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle