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Protein Overview: gi|157820925, gi...

General Information:
Name(s) found: gi|27676406 [NCBI NR]
gi|197245986 [NCBI NR]
gi|157820925 [NCBI NR]
gi|149056801 [NCBI NR]
gi|109461351 [NCBI NR]
gi|109458294 [NCBI NR]
Description(s) found:
Found 21 descriptions.
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  • gi|27676406|ref|XP_214847.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide D2 [Rattus norvegicus] [NCBI NR]
  • gi|197245986|gb|AAI68781.1| Small nuclear ribonucleoprotein D2 [Rattus norvegicus] [NCBI NR]
  • gi|157820925|ref|NP_001102869.1| small nuclear ribonucleoprotein D2 [Rattus norvegicus] [NCBI NR]
  • gi|149056801|gb|EDM08232.1| rCG54604 [Rattus norvegicus] [NCBI NR]
  • gi|109461351|ref|XP_001075460.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Rattus norvegicus] [NCBI NR]
  • gi|109458294|ref|XP_001056581.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 118 amino acids

    Gene Ontology:
    Cellular Component: ribonucleoprotein complex [IEA]
    cytosol [UNKNOWN]
    nucleoplasm [UNKNOWN]
    Biological Process: RNA splicing [UNKNOWN]
    spliceosomal snRNP assembly [UNKNOWN]
    Molecular Function: nucleic acid binding [IEA]
    protein binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLNKPKSE MTPEELQKRE EEEFNTGPLS VLTQSVKNNT QVLINCRNNK KLLGRVKAFD  60
   61 RHCNMVLENV KEMWTEVPKS GKGKKKSKPV NKDRYISKMF LRGDSVIVVL RNPLIAGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..118] PSI-BLAST 30.69897 D2 core SNRNP protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.44117021254507 bayes_pls_golite062009
  • protein binding
    		•  0.318488892917007 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle