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Protein Overview: Obp56c-PB

General Information:
Name(s) found: Obp56c-PB / FBpp0089321 [FlyBase]
Description(s) found:
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  • gi|45552755|ref|NP_995902.1| Odorant-binding protein 56c, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|45445469|gb|AAS64805.1| Odorant-binding protein 56c, isoform B [Drosophila melanogaster] [NCBI NR]
  • The gene Odorant-binding protein 56c is referred to in FlyBase by the symbol Dmel\Obp56c (CG30128, FBgn0046879). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:15587678..15588573. It has the cytological map location 56E2. Based on sequence similarity, it is predicted to have molecular function</span>: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: sensory perception of chemical stimulus. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • (AAS64805) CG30128-PB [DrosMelano7227.FASTAC.txt]
  • CG30128-PB, isoform B [Drosophila melanogaster]gi|45552755|ref|NP_995902.1| CG30128-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(15587678..15588316,15588475..15588573); ID=FBpp0089321; name=Obp56c-PB; parent=FBgn0046879,FBtr0086479; dbxref=FlyBase:FBpp0089321,FlyBase_Annotation_IDs:CG30128-PB,GB_protein:AAS64805.1,REFSEQ:NP_995902,GB_protein:AAS64805 [fly-100309-contam.fasta]
  • CG30128-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Odorant-binding protein 56c CG30128-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(15587678..15588316,15588475..15588573); ID=FBpp0089321; name=Obp56c-PB; parent=FBgn0046879,FBtr0086479; dbxref=FlyBase:FBpp0089321,FlyBase_Annotation_IDs:CG30128-PB,GB_protein:AAS64805.1,REFSEQ:NP_995902,GB_protein:AAS64805; MD5=14ae6f697b72b9347c811a26a415450c; length=245; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(15587678..15588316,15588475..15588573); ID=FBpp0089321; name=Obp56c-PB; parent=FBgn0046879,FBtr0086479; dbxref=FlyBase:FBpp0089321,FlyBase_Annotation_IDs:CG30128-PB,GB_protein:AAS64805.1,REFSEQ:NP_995902,GB_protein:AAS64805; MD5=14ae6f697b72b9347c811a26a415450c; length=245; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Odorant-binding protein 56c, isoform B OS=Drosophila melanogaster GN=Obp56c PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(15587678..15588316,15588475..15588573); ID=FBpp0089321; name=Obp56c-PB; parent=FBgn0046879,FBtr0086479; dbxref=FlyBase:FBpp0089321,FlyBase_Annotation_IDs:CG30128-PB,GB_protein:AAS64805.1,REFSEQ:NP_995902,GB_protein:AAS64805,FlyMine:FBpp0089321,modMine:FBpp0089321; MD5=14ae6f697b72b9347c811a26a415450c; length=245; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(19700970..19701068,19700173..19700811)); ID=FBpp0089321; name=Obp56c-PB; parent=FBgn0046879,FBtr0086479; dbxref=FlyBase:FBpp0089321,FlyBase_Annotation_IDs:CG30128-PB,GB_protein:AAS64805.1,REFSEQ:NP_995902,GB_protein:AAS64805,FlyMine:FBpp0089321,modMine:FBpp0089321; MD5=14ae6f697b72b9347c811a26a415450c; length=245; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(19700970..19701068,19700173..19700811)); ID=FBpp0089321; name=Obp56c-PB; parent=FBgn0046879,FBtr0086479; dbxref=FlyBase:FBpp0089321,FlyBase_Annotation_IDs:CG30128-PB,GB_protein:AAS64805.1,REFSEQ:NP_995902,GB_protein:AAS64805,FlyMine:FBpp0089321,modMine:FBpp0089321; MD5=14ae6f697b72b9347c811a26a415450c; length=245; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0089321 type=protein; loc=2R:complement(join(19700970..19701068,19700173..19700811)); ID=FBpp0089321; name=Obp56c-PB; parent=FBgn0046879,FBtr0086479; dbxref=FlyBase:FBpp0089321,FlyBase_Annotation_IDs:CG30128-PB,GB_protein:AAS64805.1,REFSEQ:NP_995902,GB_protein:AAS64805,FlyMine:FBpp0089321,modMine:FBpp0089321; MD5=14ae6f697b72b9347c811a26a415450c; length=245; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(19700970..19701068,19700173..19700811)); ID=FBpp0089321; name=Obp56c-PB; parent=FBgn0046879,FBtr0086479; dbxref=FlyBase:FBpp0089321,FlyBase_Annotation_IDs:CG30128-PB,GB_protein:AAS64805.1,REFSEQ:NP_995902,GB_protein:AAS64805,UniProt/TrEMBL:A1ZBP9,FlyMine:FBpp0089321,modMine:FBpp0089321; MD5=14ae6f697b72b9347c811a26a415450c; length=245; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 245 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: sensory perception of chemical stimulus [UNKNOWN][ISS]
    transport [IEA]
    Molecular Function: odorant binding [UNKNOWN][ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFRASLMAL LCLTLSEFVS KAWVMFFIFY ISFTRSLSVS LNMSMTRTLV PDPPNGTENK  60
   61 LSQEMLRACM RRTEISMSQL KLFHMSLMNS DYNNDNDIAP TPVQSIGDVN NLGDLDFNGN 120
  121 SQMPYLDLKH NEPLQCFVSC LYETLDLDRY NVLLEEAFKN QVQTIIQHEK AEIKECSDLQ 180
  181 GKTRCEAAYK LHLCYNHLKT LEAEQRIREI LERTEAENEG FGPEGSDFID GIQHSGEAMT 240
  241 TAKSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] deduced N/A No confident structure predictions are available.
    2 View Details [91..245] PSI-BLAST 25.154902 AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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