YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: vlc-PD

General Information:
Name(s) found: vlc-PD / FBpp0085378 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|45551020|ref|NP_724426.2| vulcan, isoform D [Drosophila melanogaster] [NCBI NR]
  • gi|45445416|gb|AAM68355.2| vulcan, isoform D [Drosophila melanogaster] [NCBI NR]
  • The gene vulcan is referred to in FlyBase by the symbol Dmel\vlc (CG8390, FBgn0259978). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:1589612..1592944. It has the cytological map location 41F9-41F8. Its molecular function is unknown. It is reported to be involved in the biological process</span>: imaginal disc-derived leg morphogenesis. 11 alleles are reported. The phenotypes of these alleles are annotated with: metathoracic tarsal segment 2; leg; wing; metathoracic tibia. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
  • (AAM68355) CG8390-PD [DrosMelano7227.FASTAC.txt]
  • CG8390-PD, isoform D [Drosophila melanogaster]gi|45551020|ref|NP_724426.2| CG8390-PD [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(1589617..1589692,1590372..1590452,1590556..1591721,1591791..1591887,1591940..1592424); ID=FBpp0085378; name=vlc-PD; parent=FBgn0259978,FBtr0086042; dbxref=GB_protein:AAM68355.1,FlyBase:FBpp0085378,FlyBase_Annotation_IDs:CG8390-PD [fly-100309-contam.fasta]
  • CG8390-PD, isoform D [Drosophila melanogaster] [nr-271106-contam.fasta]
  • vulcan CG8390-PD, isoform D [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(1589617..1589692,1590372..1590452,1590556..1591721,1591791..1591887,1591940..1592424); ID=FBpp0085378; name=vlc-PD; parent=FBgn0259978,FBtr0086042; dbxref=GB_protein:AAM68355.1,FlyBase:FBpp0085378,FlyBase_Annotation_IDs:CG8390-PD,GB_protein:AAM68355.2,REFSEQ:NP_724426,GB_protein:AAM68355; MD5=2521a4857777d210785e3a909ab4917e; length=634; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(1589617..1589692,1590372..1590452,1590556..1591721,1591791..1591887,1591940..1592424); ID=FBpp0085378; name=vlc-PD; parent=FBgn0259978,FBtr0086042; dbxref=GB_protein:AAM68355.1,FlyBase:FBpp0085378,FlyBase_Annotation_IDs:CG8390-PD,GB_protein:AAM68355.2,REFSEQ:NP_724426,GB_protein:AAM68355; MD5=2521a4857777d210785e3a909ab4917e; length=634; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Vulcan, isoform D OS=Drosophila melanogaster GN=vlc PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • Vulcan, isoform D OS=Drosophila melanogaster GN=vlc PE=4 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
    • Organism: Drosophila melanogaster
    Length: 634 amino acids

    Gene Ontology:
    Cellular Component: septate junction [ISS]
    Biological Process: imaginal disc-derived leg morphogenesis [NAS]
    cell-cell signaling [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLMSRSWQ HNRCSPISFY WFSGISSVFM DRSLDSIGSC SLDVDADSSD ISDTSGSLNF  60
   61 PTPVSVRDIT REFTANLRER CVPNLPPQPQ HKTPAYVESR SSELEHMVLS PAIVECDQEP 120
  121 SSNDFDETSA ENSQEAPEKK PSYLNLACCV NGYSNLTTYD SKIRQDINKS REVSPIRPST 180
  181 SSLQYCKRNH FLATPTLHSM PSPATKCKPI EPNNNSNDSS GNFSSGSGHS NGNGSFIKQR 240
  241 VERLYGPGAL AQGFYSPKKH GQSPSNAAGR SERGQVEIDS LQGSELARKF KQLSPSKDYG 300
  301 EFRKKMQKKC SQSTTARIDE PLHSPGLNGD LDLPVFRHLS QEFRAQLPTV SPKRGAPRSC 360
  361 MAPDVLLVDN ESSPDHGPTD EVDHESTKMD KLASEEYIST SNISVEAVVK DGNFFLKILK 420
  421 EEQSRLLVLA ALAEKYADAL STNPDISEDT FGLLRSASGK ARLLVSQKMK QFEGLCHNNL 480
  481 NRSPEDKFPT TLDDLQGFWD MVYLQVEHVD SIFADIEKLK SNDWKVKAQS VADQPDLHTI 540
  541 PTKTIKPSKV GVSQVKTVGK ASSVRVNGSA PPPPNSAAAL KREAQRKLLL EMKRQRREAM 600
  601 TAAAKLNPIN VDADPDVPGI IGDSCANPSV SNGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..130] MSA 1.103989 View MSA. No confident structure predictions are available.
    2 View Details [131..283] MSA 3.110996 View MSA. No confident structure predictions are available.
    3 View Details [284..450] MSA 3.10898 View MSA. No confident structure predictions are available.
    4 View Details [451..634] MSA 3.060965 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.66

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle