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Protein Overview: ca-PA, FBpp0311230

General Information:
Name(s) found: FBpp0311230 [FlyBase]
ca-PA / FBpp0084850 [FlyBase]
Description(s) found:
Found 24 descriptions.
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  • type=protein; loc=3R:join(25633057..25633324,25633527..25634128,25634191..25634728,25635011..25635543,25635615..25635925,25635988..25636530,25636586..25636889,25636949..25637176,25637237..25637369,25637430..25637545,25637606..25637775,25637829..25637910,25637978..25638211,25638268..25638720,25638783..25640153); ID=FBpp0311230; name=ca-PB; parent=FBgn0000247,FBtr0344975; dbxref=FlyBase:FBpp0311230,FlyBase_Annotation_IDs:CG31037-PB; MD5=11b86b6f385f6e90f241f12ed6fb7d3a; length=1961; release=r5.56; species=Dmel; [FlyBase]
  • The gene claret is referred to in FlyBase by the symbol Dmel\ca (CG31037, FBgn0000247). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:25632970..25640782. It has the cytological map location 99C2. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: eye pigment granule organization; ommochrome biosynthetic process. 64 alleles are reported. The phenotypes of these alleles are annotated with 11 unique terms, many of which group under: organ system; peripheral nervous system; external compound sense organ; nervous system; adult; compound cell cluster organ; region of integument; female genitalia; adult segment; Malpighian tubule; adult mesothoracic segment. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1961 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: eye pigment precursor transport [TAS]
    ommochrome biosynthetic process [IMP]
    eye pigment granule organization [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQAELKEL GMFELRPLIT NISCKLSAVT AGLDEKRQFL CLVSEENEIL LRYISAASGQ  60
   61 EVVKMISWFR NRVIHDVCFD PAGVWLLVLC FDNTLHIVPA LALVDKAHGL SACSLYSTTQ 120
  121 VTSYIIPFVG PHECPNSKKC PNHSTGLEES TAEPMDQLAE NLEQARLQEG EEEEPLGHDL 180
  181 PEHMLVRNSG TEDAVQPLPQ QQQTIDTTGN SQVMAASFMA SKTCPYPLSV VWWKTNSGQN 240
  241 RAIIGYSDGS ICFVGLSPNC PMIASTAIEN GSVMRLVICK DKAYDGVMLL ITSSLKQQYK 300
  301 LLLEQKAIKY VYPGDSSPTT REGAWQIVMS VQDKHQSAAT GARQSNSSDP ASDSSQLEED 360
  361 VFAPPSSDDV VCSGPGAANS DPSTVSASAE AATADVPPPP APPSYSEAVA RQSGDQGGVR 420
  421 FQQQQLPAGS MDGILPATRA RLASLKSLGS KKLQAIKMRL SDQRQKFDEF MPDSTMGSFA 480
  481 IMDSPSVTPE PLGTTSGSFY NIQNLRSTFL LSALHSNSHS LTVHSIDISL KPLFVYKIPK 540
  541 HTQEILISSN ILYGIHYVDL HCRSDSDHFT AASLLDDPLV ANTEKENRDA DIEKVDQSDV 600
  601 SAQKSDSTSA TTTATSSLDQ SDMPSTAINA VSVISSAMAS LHTSDEDRFN NLAQLGLFRF 660
  661 ENETVLHLYQ MAQYRNPSAE PETLTKEEKA KAFELKDIHT PMDYIQFYET ADVSSEFSLR 720
  721 QMEIMQSEFP KINYDPSYVI TNKNVYTIQL KKEPFELFLD AALQNEFNQC RDFCNTFDLS 780
  781 FEQCIEFAGD YLLRRKKITQ ALLTYNKARV KPIRTALKLA MYGHTYALMQ LSAMALKSTY 840
  841 LLRSRYLGHP LLKGILGDIT YRHSEDVRVI LPEKHEEEDV NSGVFCSDYH YGVDESISAL 900
  901 QMSPSSQFHL ANLLLITLAE KAVNDKNYIP LWNFLVTNSK YHTNMTSIVL CQSGLFSSAI 960
  961 ILAKIRGVCL DTFNALISVV AQEFGWYNEL NVCLYNLSEN IFLETITYLP HVSMDYFAFI1020
 1021 QEKLHHIRPC VLQRLSKQLN PFSPALRPIV SHNSDCAMSN DNNPQLFEFC KSLIETYLAV1080
 1081 LIHMESQRVK YDSIVNALSN FRINYEDNQF AIESSRFKPI SAGCAYCACV VDGTAYFWGS1140
 1141 SGIPSYYSAQ KSTEPPEPAH AVKSLDLLSQ LNLQVHAIKC GRQHTLILTN NGLYSLGNNN1200
 1201 LCQLGIGRHM QMALQPMLVT ALDGMNITML EAGQYHNAAV ADGKLYMWGW GIYGQLGQGS1260
 1261 CENIATPQLV SFFKFKKILQ ISLGHAHTLV LCGAPNSHME ANHCGNELFV FGSNHFGQLG1320
 1321 TGNSDHGDTK TNLPVRLEVG DCSLRLIHTK FFTNLAVDEQ DRLFTWGSSP QALRLANQIK1380
 1381 RRANAKQKME ENQQRELLSK QLEATLLPAP IPSTSTLVEP TTSYAAVVAG STPKSSVSDT1440
 1441 KDCQDVQNEA APSDATETIA PASAKAAPPP VPVASPPVLV PEPDPTEHLT PHLVDTSEVA1500
 1501 GRILQISSGL FHFCLISSSC TLYTWGKNLE HQLGTEDKDR RAVLKPSPID SIERPMYVDC1560
 1561 GSDFTLVMTT DHVVRAFGGN SNGQCGRDLG PSVERMRQRV VCLPATKRLV RFESQCVEVP1620
 1621 VEINLPRPRI RLDQDPVRYL KVMPPYQPHF LQPANISFDQ HCSVGTPNYK SSTEHAATGQ1680
 1681 DSDDMLSSLE NLSQNDASFS YNAPVLGDAH SSLDMDYTPE EQSYVPLPEQ AVGSGMPANA1740
 1741 EQLLGRDDDD GSTYTQSTEG MGESSLQHLR HYIHYCLYAF HGLYNPDKIG ECARPHRNEY1800
 1801 RIRICMLNFR FVEAFRLCLQ SCGSAQRTLK LFEYFSKDTG YVPLRRTDLK HLIYHLCLHF1860
 1861 LERKFDMLEC ERFFMGDLDY YLLELAYVFY FNNNNSTLEQ NLNQKFKQLI AAADSNQAAT1920
 1921 SAGQELEQLQ DTDVIFDSFT VKFKTILCQR LLSYSDCDAA N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] deduced N/A No confident structure predictions are available.
    2 View Details [142..381] deduced N/A No confident structure predictions are available.
    3 View Details [382..624] deduced N/A No confident structure predictions are available.
    4 View Details [625..862] deduced N/A No confident structure predictions are available.
    5 View Details [863..927] deduced N/A No confident structure predictions are available.
    6 View Details [928..1147] PSI-BLAST 33.09691 beta-lactamase inhibitor protein-II, BLIP-II
    7 View Details [1148..1627] PSI-BLAST 84.09691 Regulator of chromosome condensation RCC1
    8 View Details [1628..1813] deduced N/A No confident structure predictions are available.
    9 View Details [1814..1961] MSA 1.040995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7
    Term Confidence Notes
  • catalytic activity
    		•  0.632410858101154 bayes_pls_golite062009
  • binding
    		•  0.460156286872512 bayes_pls_golite062009
    8 No functions predicted.
    9 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle