YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG6995-PB

General Information:
Name(s) found: CG6995-PB / FBpp0084078 [FlyBase]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • This gene is referred to in FlyBase by the symbol Dmel\CG6995 (CG6995, FBgn0039229). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:20643191..20648095. It has the cytological map location 96A23. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: regulation of alternative nuclear mRNA splicing, via spliceosome. One allele is reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 928 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC]
    Biological Process: regulation of alternative nuclear mRNA splicing, via spliceosome [IMP]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEAGKKIAE LRVCDLKSEL EKRELETVGP KAVLIERLEK SLRAEGLDPA THLIVPGAKA  60
   61 KKPFAMPMKD LQSEVVIKEE PIDANEEEVK VEQQDDYQNG NDYSHHADDD GHEIDQVGDV 120
  121 DDECVILDDD DEEDEDHVYD DEPQSGDGDA EGKAQDDGAE NNGDDKAIIH GEEENTGDTG 180
  181 NMDNDESINL TIGEDEQKLL HDEASDDKSI KSVKPANKSE KSNSKDADKK NDDGARSKKR 240
  241 DEKSGDKKDS SEQKSSGKSS NQKDDKEKST AAPGGATSST ASSAAGSKSG SGSSAGNGTG 300
  301 ANSNNKQATL SRNLWVSGLS TLTRASDLKA IFSKFGKVIG AKVVTNTRTP GTRCYGYVTM 360
  361 SSSADASRCI ENLHRTELHG RIISVERTKN EIGGSLNSKE GKGKAPGDAG NKKKEDDSGK 420
  421 KSGSGKGSSS NSGDDKKGGD GNGDSKSVGG DLKRDGKESN RARSRRNDDR GKSLASQDRP 480
  481 RHDRERSAKG SQDHRSGRNP RDVDREIQQR QRERERRQRE MLSYQKIREE RERQRLRERE 540
  541 RELREEERRR REARERQRIE EERLQEERRK LAVERERLER EKAELLRMER ERQKLEREKI 600
  601 ELERLELKRQ QMKIMESRDD PGKRGVSKRA DDRYGDVTDR KRTAIFDAPP PPRFDTNLVS 660
  661 SRSTYDKKHD DYGSSSSTKR VLDDYSSSSK RLDYSSKRND YSSSSGSKRG AVDDYTAVPT 720
  721 KRSNDYSASS SSKRDDYKRD EVRHLPLSGT VGGGSSSSYL HKNNTAGGGA GSYVHKNNTS 780
  781 GTGGRYNDSD RSNTSSYRRD DSHSLGNKRY DNSSGGGGAY GSSSNSVNIW APSSGGSSSH 840
  841 LGSGGGGGNQ IKSYGNNGMS SNMHSTNSWQ KSAPVDDNGW RQVPARFDRG YNERSTGYQG 900
  901 QSGGGGAGGM YGASRPAQDR YSGPVSRY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..317] PSI-BLAST 13.522879 Heavy meromyosin subfragment
    2 View Details [318..481] FFAS03 4.67 Hu antigen C (Huc)
    3 View Details [482..579] deduced N/A No confident structure predictions are available.
    4 View Details [580..788] PSI-BLAST 3.39794 No description for 2i1jA was found.
    5 View Details [789..928] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.787118623292657 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle