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Protein Overview: Rlc1-PA

General Information:
Name(s) found: Rlc1-PA / FBpp0081598 [FlyBase]
Description(s) found:
Found 12 descriptions.
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  • The gene Rlc1 is referred to in FlyBase by the symbol Dmel\Rlc1 (CG9378, FBgn0014023). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:5340538..5341829. It has the cytological map location 85D19. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: translation. 6 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 227 amino acids

    Gene Ontology:
    Cellular Component: mitochondrial large ribosomal subunit [ISS]
    Biological Process: translation [IEA]
    Molecular Function: structural constituent of ribosome [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSALIKCLN LAKTVGNATV RSFLAAPKQP WQSCSAAALQ TPHVQMPMQM HTSAVRRDLM  60
   61 EFFDDKKNWS ENEVKVGRAW RTEELRIKSN KELHQLWFVL LKERNMLLTM EHECNDKMEV 120
  121 FPSPERIDKV KISMENLETV VRERNKAYHL LETGETGERP QKAVKNAFGL QVSYKACEHA 180
  181 LPPFMNLKWI KSRNIGYGGR AVNRFLLKYR EKLYNAKRKA KKYVALS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..163] FFAS03 1.11 70S ribosome functional complex
    2 View Details [164..227] MSA 1.035991 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  5.61697803233575 bayes_pls_golite062009
  • structural molecule activity
    		•  5.3736463631302 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle