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Protein Overview: Rcp-PB, FBpp0309740

General Information:
Name(s) found: FBpp0309740 [FlyBase]
Rcp-PB / FBpp0074115 [FlyBase]
Description(s) found:
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  • gi|45555803|ref|NP_996493.1| CG4875, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|45447029|gb|AAS65391.1| CG4875, isoform B [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=X:join(16778634..16778641,16778719..16778833,16778897..16779049,16779109..16779549); ID=FBpp0309740; name=Rcp-PC; parent=FBgn0030801,FBtr0342976; dbxref=FlyBase:FBpp0309740,FlyBase_Annotation_IDs:CG4875-PC; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r5.56; species=Dmel; [FlyBase]
  • The gene Receptor component protein is referred to in FlyBase by the symbol Dmel\Rcp (CG4875, FBgn0030801). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:16778616..16779897. It has the cytological map location 15B4. Based on sequence similarity, it is predicted to have molecular function</span>: G-protein coupled receptor activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: transcription. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • (AAS65391) CG4875-PB [DrosMelano7227.FASTAC.txt]
  • CG4875-PB, isoform B [Drosophila melanogaster]gi|45555803|ref|NP_996493.1| CG4875-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:join(16778634..16778641,16778719..16778833,16778897..16779049,16779109..16779549); ID=FBpp0074115; name=CG4875-PB; parent=FBgn0030801,FBtr0074341; dbxref=GB_protein:AAS65391.1,FlyBase:FBpp0074115,FlyBase_Annotation_IDs:CG4875-PB,REFSEQ [fly-100309-contam.fasta]
  • CG4875-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:join(16778634..16778641,16778719..16778833,16778897..16779049,16779109..16779549); ID=FBpp0074115; name=CG4875-PB; parent=FBgn0030801,FBtr0074341; dbxref=GB_protein:AAS65391.1,FlyBase:FBpp0074115,FlyBase_Annotation_IDs:CG4875-PB,REFSEQ:NP_996493,GB_protein:AAS65391; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:join(16778634..16778641,16778719..16778833,16778897..16779049,16779109..16779549); ID=FBpp0074115; name=Rcp-PB; parent=FBgn0030801,FBtr0074341; dbxref=GB_protein:AAS65391.1,FlyBase:FBpp0074115,FlyBase_Annotation_IDs:CG4875-PB,REFSEQ:NP_996493,GB_protein:AAS65391; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Receptor component protein, isoform B OS=Drosophila melanogaster GN=Rcp PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:join(16778634..16778641,16778719..16778833,16778897..16779049,16779109..16779549); ID=FBpp0074115; name=Rcp-PB; parent=FBgn0030801,FBtr0074341; dbxref=GB_protein:AAS65391.1,FlyBase:FBpp0074115,FlyBase_Annotation_IDs:CG4875-PB,REFSEQ:NP_996493,GB_protein:AAS65391,FlyMine:FBpp0074115,modMine:FBpp0074115; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:join(16884601..16884608,16884686..16884800,16884864..16885016,16885076..16885516); ID=FBpp0074115; name=Rcp-PB; parent=FBgn0030801,FBtr0074341; dbxref=GB_protein:AAS65391.1,FlyBase:FBpp0074115,FlyBase_Annotation_IDs:CG4875-PB,REFSEQ:NP_996493,GB_protein:AAS65391,FlyMine:FBpp0074115,modMine:FBpp0074115; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(16884601..16884608,16884686..16884800,16884864..16885016,16885076..16885516); ID=FBpp0309740; name=Rcp-PC; parent=FBgn0030801,FBtr0342976; dbxref=GB_protein:AAF48678,REFSEQ:NP_573175,FlyBase:FBpp0309740,FlyBase_Annotation_IDs:CG4875-PC; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(16884601..16884608,16884686..16884800,16884864..16885016,16885076..16885516); ID=FBpp0074115; name=Rcp-PB; parent=FBgn0030801,FBtr0074341; dbxref=GB_protein:AAS65391.1,FlyBase:FBpp0074115,FlyBase_Annotation_IDs:CG4875-PB,REFSEQ:NP_996493,GB_protein:AAS65391,FlyMine:FBpp0074115,modMine:FBpp0074115; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=X:join(16884601..16884608,16884686..16884800,16884864..16885016,16885076..16885516); ID=FBpp0309740; name=Rcp-PC; parent=FBgn0030801,FBtr0342976; dbxref=GB_protein:AAF48678,REFSEQ:NP_573175,FlyBase:FBpp0309740,FlyBase_Annotation_IDs:CG4875-PC; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Receptor component protein, isoform B OS=Drosophila melanogaster GN=Rcp PE=1 SV=2 [DROME.fasta.20160308]
  • FBpp0074115 type=protein; loc=X:join(16884601..16884608,16884686..16884800,16884864..16885016,16885076..16885516); ID=FBpp0074115; name=Rcp-PB; parent=FBgn0030801,FBtr0074341; dbxref=GB_protein:AAS65391.1,FlyBase:FBpp0074115,FlyBase_Annotation_IDs:CG4875-PB,REFSEQ:NP_996493,GB_protein:AAS65391,FlyMine:FBpp0074115,modMine:FBpp0074115; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0309740 type=protein; loc=X:join(16884601..16884608,16884686..16884800,16884864..16885016,16885076..16885516); ID=FBpp0309740; name=Rcp-PC; parent=FBgn0030801,FBtr0342976; dbxref=GB_protein:AAF48678,REFSEQ:NP_573175,FlyBase:FBpp0309740,FlyBase_Annotation_IDs:CG4875-PC; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:join(16884601..16884608,16884686..16884800,16884864..16885016,16885076..16885516); ID=FBpp0074115; name=Rcp-PB; parent=FBgn0030801,FBtr0074341; dbxref=GB_protein:AAS65391.1,FlyBase:FBpp0074115,FlyBase_Annotation_IDs:CG4875-PB,REFSEQ:NP_996493,GB_protein:AAS65391,UniProt/TrEMBL:Q9VX99,FlyMine:FBpp0074115,modMine:FBpp0074115; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=X:join(16884601..16884608,16884686..16884800,16884864..16885016,16885076..16885516); ID=FBpp0309740; name=Rcp-PC; parent=FBgn0030801,FBtr0342976; dbxref=GB_protein:AAF48678,REFSEQ:NP_573175,FlyBase:FBpp0309740,FlyBase_Annotation_IDs:CG4875-PC,UniProt/TrEMBL:Q9VX99; MD5=e096a8e705ed68fc1b61ee315c8c2ed9; length=238; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 238 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription [IEA]
    Molecular Function: nucleotide binding [IEA]
    G-protein coupled receptor activity [ISS]
    DNA-directed RNA polymerase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METINPTFSY LTNLEVMQIL QKIKSTKKKF GMRNLATVTY EALQYLEESP CKTQTRENIM  60
   61 NYVKDLSSYR LKSQEILQMI NDPPTSALHT QLLIDDNKAP LTDEENEKII QLSYKHFHGG 120
  121 ETKGAAKETP AEKPAESTAK AGKQSGVKRN AQAKSNPAEQ IAPADKTTPG DGVTPANVAT 180
  181 PSSEATTTTP AEEASPVETS SSENNATPAN EATTAPATDA PTSMETKSNP TPDGENLG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] PSI-BLAST 17.154902 Subunits Rpb4 and Rpb7 of human RNA polymerase II
    2 View Details [123..238] FFAS03 1.69 No description for 2j63A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.649848167124196 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
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