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Protein Overview: gi|9714268, gi|1...

General Information:
Name(s) found: gi|9714268 [NCBI NR]
gi|24234753 [NCBI NR]
gi|119604537 [NCBI NR]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • gi|9714268|emb|CAC01405.1| double-stranded RNA binding nuclear protein DRBP76 [Homo sapiens] [NCBI NR]
  • gi|24234753|ref|NP_004507.2| interleukin enhancer binding factor 3 isoform b [Homo sapiens] [NCBI NR]
  • gi|119604537|gb|EAW84131.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_a [Homo sapiens] [NCBI NR]
    • Organism: Homo sapiens
    Length: 702 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPMRIFVND DRHVMAKHSS VYPTQEELEA VQNMVSHTER ALKAVSDWID EQEKGSSEQA  60
   61 ESDNMDVPPE DDSKEGAGEQ KTEHMTRTLR GVMRVGLVAK GLLLKGDLDL ELVLLCKEKP 120
  121 TTALLDKVAD NLAIQLAAVT EDKYEILQSV DDAAIVIKNT KEPPLSLTIH LTSPVVREEM 180
  181 EKVLAGETLS VNDPPDVLDR QKCLAALASL RHAKWFQARA NGLKSCVIVI RVLRDLCTRV 240
  241 PTWGPLRGWP LELLCEKSIG TANRPMGAGE ALRRVLECLA SGIVMPDGSG IYDPCEKEAT 300
  301 DAIGHLDRQQ REDITQSAQH ALRLAAFGQL HKVLGMDPLP SKMPKKPKNE NPVDYTVQIP 360
  361 PSTTYAITPM KRPMEEDGEE KSPSKKKKKI QKKEEKAEPP QAMNALMRLN QLKPGLQYKL 420
  421 VSQTGPVHAP IFTMSVEVDG NSFEASGPSK KTAKLHVAVK VLQDMGLPTG AEGRDSSKGE 480
  481 DSAEETEAKP AVVAPAPVVE AVSTPSAAFP SDATAEQGPI LTKHGKNPVM ELNEKRRGLK 540
  541 YELISETGGS HDKRFVMEVE VDGQKFQGAG SNKKVAKAYA ALAALEKLFP DTPLALDANK 600
  601 KKRAPVPVRG GPKFAAKPHN PGFGMGGPMH NEVPPPPNLR GRGRGGSIRG RGRGRGFGGA 660
  661 NHGGYMNAGA GYGSYGYGGN SATAGYSDFF TDCYGYHDFG SS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)
    View Run MIS12 No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..391] FFAS03 2.94 Crystal structure of the 2'-specific and double-stranded RNA-activated interferon-induced antiviral protein 2'-5'-oligoadenylate synthetase
    2 View Details [392..465] PSI-BLAST 14.30103 No description for 2dmyA was found.
    3 View Details [466..595] FFAS03 4.06 dsRNA-dependent protein kinase pkr
    4 View Details [596..702] PSI-BLAST 14.0 Crystal structure of the catalytic domain of an adenosine deaminase that acts on RNA (hADAR2) bound to inositol hexakisphosphate (IHP)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.0967966107058 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.568291021783733 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.512852377741257 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.378944807711308 bayes_pls_golite062009
  • protein binding
    		•  0.177198796887481 bayes_pls_golite062009
  • transferase activity
    		•  0.02609645275331 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.85876367411468 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.47797565464292 bayes_pls_golite062009
  • protein binding
    		•  1.45612186272752 bayes_pls_golite062009
  • RNA binding
    		•  0.728830513014366 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.608351833047597 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  0.486416546047936 bayes_pls_golite062009
  • DNA binding
    		•  0.231787740716432 bayes_pls_golite062009
  • tubulin binding
    		•  0.0967166438103781 bayes_pls_golite062009
  • microtubule binding
    		•  0.0936187743249679 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  2.72994153207409 bayes_pls_golite062009
  • protein binding
    		•  1.36091923951901 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.29586026296723 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.600021977124743 bayes_pls_golite062009
  • RNA binding
    		•  0.416434097640643 bayes_pls_golite062009
  • DNA binding
    		•  0.184635431648199 bayes_pls_golite062009
  • tubulin binding
    		•  0.0442753884060716 bayes_pls_golite062009
  • microtubule binding
    		•  0.0314632333581821 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle