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Protein Overview: YDDV_ECOLI

General Information:
Name(s) found: YDDV_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|92087009|sp|P0AA89.1|YDDV_ECOLI RecName: Full=Diguanylate cyclase yddV; Short=DGC [NCBI NR]
  • pir||E64902 hypothetical protein b1490 - Escherichia coli (strain K-12) [NCBI NR]
  • pir||B85727 hypothetical protein Z2219 [imported] - Escherichia coli (strain O157:H7, substrain EDL933) [NCBI NR]
  • pir||G90890 hypothetical protein ECs2095 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) [NCBI NR]
  • gi|209770576|gb|ACI83600.1| hypothetical protein ECs2095 [Escherichia coli] [NCBI NR]
  • gi|209770574|gb|ACI83599.1| hypothetical protein ECs2095 [Escherichia coli] [NCBI NR]
  • gi|209770572|gb|ACI83598.1| hypothetical protein ECs2095 [Escherichia coli] [NCBI NR]
  • gi|209770570|gb|ACI83597.1| hypothetical protein ECs2095 [Escherichia coli] [NCBI NR]
  • gi|209770568|gb|ACI83596.1| hypothetical protein ECs2095 [Escherichia coli] [NCBI NR]
  • dbj|BAA15161.1| ORF_ID:o279#8~similar to [SwissProt Accession Number P54595] [Escherichia coli] [NCBI NR]
  • dbj|BAA15155.1| ORF_ID:o279#8~similar to [SwissProt Accession Number P54595] [Escherichia coli] [NCBI NR]
  • Hypothetical protein yddV - Escherichia coli [Swiss-Prot]
  • hypothetical protein b1490 [Escherichia coli K12]gi|15831349|ref|NP_310122.1| hypothetical protein ECs2095 [Escherichia coli O157:H7]gi|15801648|ref|NP_287665.1| hypothetical protein Z2219 [Escherichia coli O157:H7 EDL933]gi|1787766|gb|AAC74563.1| orf, [nrdb_11152004_Chlamydomonas]
  • Diguanylate cyclase yddV (DGC) [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Diguanylate cyclase DosC OS=Escherichia coli (strain K12) GN=dosC PE=1 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
    • Organism: Escherichia coli
    Length: 460 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMYFKRMKD EWTGLVEQAD PPIRAKAAEI AVAHAHYLSI EFYRIVRIDP HAEEFLSNEQ  60
   61 VERQLKSAME RWIINVLSAQ VDDVERLIQI QHTVAEVHAR IGIPVEIVEM GFRVLKKILY 120
  121 PVIFSSDYSA AEKLQVYHFS INSIDIAMEV MTRAFTFSDS SASKEDENYR IFSLLENAEE 180
  181 EKERQIASIL SWEIDIIYKI LLDSDLGSSL PLSQADFGLW FNHKGRHYFS GIAEVGHISR 240
  241 LIQDFDGIFN QTMRNTRNLN NRSLRVKFLL QIRNTVSQII TLLRELFEEV SRHEVGMDVL 300
  301 TKLLNRRFLP TIFKREIAHA NRTGTPLSVL IIDVDKFKEI NDTWGHNTGD EILRKVSQAF 360
  361 YDNVRSSDYV FRYGGDEFII VLTEASENET LRTAERIRSR VEKTKLKAAN GEDIALSLSI 420
  421 GAAMFNGHPD YERLIQIADE ALYIAKRRGR NRVELWKASL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] FFAS03 2.43 Crystal Structure of HemAT sensor domain from B.subtilis in the cyano-liganded form
    2 View Details [80..460] PSI-BLAST 43.522879 Response regulator PleD in complex with c-diGMP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.151597543144863 bayes_pls_golite062009
    2
    Term Confidence Notes
  • two-component response regulator activity
    		•  0.916519233091696 bayes_pls_golite062009
  • DNA binding
    		•  0.504254929272308 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.317238312592983 bayes_pls_golite062009
  • signal transducer activity
    		•  0.153335668160196 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.153335668160196 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle