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Protein Overview: YDDE_ECOLI

General Information:
Name(s) found: YDDE_ECOLI [Swiss-Prot]
Description(s) found:
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  • pir||C64899 yddE protein - Escherichia coli (strain K-12) [NCBI NR]
  • gi|2506666|sp|P37757.2|YDDE_ECOLI RecName: Full=Uncharacterized isomerase yddE; AltName: Full=ORFB [NCBI NR]
  • dbj|BAA15113.1| ORF_ID:o276#3~similar to [PIR Accession Number S11432] [Escherichia coli] [NCBI NR]
  • gi|1742383|dbj|BAA15101.1| conserved hypothetical protein [Escherichia coli W3110] [NCBI NR]
  • Uncharacterized isomerase yddE (EC 5.1.-.-) (ORFB) - Escherichia coli [Swiss-Prot]
  • hypothetical protein b1464 [Escherichia coli K12]gi|1787737|gb|AAC74546.1| orf, hypothetical protein; conserved protein [Escherichia coli K12]gi|7467146|pir||C64899 yddE protein - Escherichia coli (strain K-12)gi|2506666|sp|P37757|YDDE_ECOLI Hypothetic [nrdb_11152004_Chlamydomonas]
  • Uncharacterized isomerase yddE (ORFB) [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Uncharacterized isomerase yddE OS=Escherichia coli (strain K12) GN=yddE PE=1 SV=2 [uniprot-Ecoli-reviewed-110511.fasta]
  • Uncharacterized isomerase YddE OS=Escherichia coli (strain K12) GN=yddE PE=1 SV=2 [uniprot_sprot.fasta.20160308]
    • Organism: Escherichia coli
    Length: 297 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPQVYHVDA FTSQPFRGNS AGVVFPADNL SEAQMQLIAR ELGHSETAFL LHSDDSDVRI  60
   61 RYFTPTVEVP ICGHATVAAH YVRAKVLGLG NCTIWQTSLA GKHRVTIEKH NDDYRISLEQ 120
  121 GTPGFEPPLE GETRAAIINA LHLTEDDILP GLPIQVATTG HSKVMIPLKP EVDIDALSPD 180
  181 LNALTAISKK IGCNGFFPFQ IRPGKNETDG RMFSPAIGIV EDPVTGNANG PMGAWLVHHN 240
  241 VLPHDGNVLR VKGHQGRALG RDGMIEVTVT IRDNQPEKVT ISGTAVILFH AEWAIEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..297] PSI-BLAST 64.045757 X-RAY STRUCTURE OF YDDE_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET25.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.00848565859536 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  0.0628393252100677 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle