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Protein Overview: YCDO_ECOLI

General Information:
Name(s) found: YCDO_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|77416622|sp|P0AB24.1|YCDO_ECOLI RecName: Full=UPF0409 protein ycdO; Flags: Precursor [NCBI NR]
  • pir||H64843 ycdO protein - Escherichia coli (strain K-12) [NCBI NR]
  • UPF0409 protein ycdO precursor - Escherichia coli [Swiss-Prot]
  • hypothetical protein b1018 [Escherichia coli K12]gi|30062554|ref|NP_836725.1| hypothetical protein S1090 [Shigella flexneri 2a str. 2457T]gi|24112429|ref|NP_706939.1| hypothetical protein SF1020 [Shigella flexneri 2a str. 301]gi|24051307|gb|AAN42646.1| [nrdb_11152004_Chlamydomonas]
  • UPF0409 protein ycdO precursor [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • UPF0409 protein ycdO OS=Escherichia coli (strain K12) GN=ycdO PE=1 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
    • Organism: Escherichia coli
    Length: 375 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTINFRRNAL QLSVAALFSS AFMANAADVP QVKVTVTDKQ CEPMTITVNA GKTQFIIQNH  60
   61 SQKALEWEIL KGVMVVEERE NIAPGFSQKM TANLQPGEYD MTCGLLTNPK GKLIVKGEAT 120
  121 ADAAQSDALL SLGGAITAYK AYVMAETTQL VTDTKAFTDA IKAGDIEKAK ALYAPTRQHY 180
  181 ERIEPIAELF SDLDGSIDAR EDDYEQKAAD PKFTGFHRLE KALFGDNTTK GMDQYAEQLY 240
  241 TDVVDLQKRI SELAFPPSKV VGGAAGLIEE VAASKISGEE DRYSHTDLWD FQANVEGSQK 300
  301 IVDLLRPQLQ KANPELLAKV DANFKKVDTI LAKYRTKDGF ETYDKLTDAD RNALKGPITA 360
  361 LAEDLAQLRG VLGLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] FFAS03 2.95 Amicyanin
    2 View Details [121..285] MSA 7.118996 View MSA. No confident structure predictions are available.
    3 View Details [286..375] MSA 1.113991 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cation transmembrane transporter activity
    		•  2.76760395701129 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.71776476059735 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.47457164800953 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  2.37085675246767 bayes_pls_golite062009
  • transition metal ion transmembrane transporter activity
    		•  1.97742135944175 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  1.34694403527701 bayes_pls_golite062009
  • iron ion transmembrane transporter activity
    		•  1.33830105950462 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  1.15849170179095 bayes_pls_golite062009
  • transporter activity
    		•  1.07068062043283 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  1.04695981379478 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.945328688400573 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.676868199441525 bayes_pls_golite062009
  • di-, tri-valent inorganic cation transmembrane transporter activity
    		•  0.591685560349053 bayes_pls_golite062009
  • copper ion binding
    		•  0.427568187641398 bayes_pls_golite062009
  • ferroxidase activity
    		•  0.0511841475612584 bayes_pls_golite062009
  • oxidoreductase activity, oxidizing metal ions, oxygen as acceptor
    		•  0.0511841475612584 bayes_pls_golite062009
  • binding
    		•  0.00959244302248818 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle