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Protein Overview: SO2342

General Information:
Name(s) found: SO2342 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
Found 6 descriptions.
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  • quinolinate synthetase complex subunit A [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 357 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLFAPTI ETIDYPFPPK PVPLSDAQKA DYKARIKQLL IEKDAVLVAH YYTDPEIQAL  60
   61 AEETGGCVSD SLEMARFGRD HPAKTLIVAG VKFMGETAKI LSPEKTILMP TLEATCSLDL 120
  121 GCPIDKFSAF CDAHPDHTVV VYANTSAAVK ARADWVVTSS IALEIVEHLD SEGKKIIWGP 180
  181 DRHLGSYIAK QTGAEMLMWQ GDCIVHDEFK ANALRDLKSV YPDAAILVHP ESPASVVAMA 240
  241 DAVGSTSQLI KAAQTMPNER FIVATDRGIF YKMQQAAPGK TLIEAPTGGN GATCKSCAHC 300
  301 PWMAMNGLKA IEASLSNSDK TTHEIFVDED LRVKALIPLT RMLDFAKTLN MKVKGNA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..357] PSI-BLAST 120.0 Crystal structure of quinolinate synthase (nadA)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • quinolinate synthetase A activity
    		•  13.6613396373416 bayes_pls_golite062009
  • catalytic activity
    		•  1.94308403509017 bayes_pls_golite062009
  • binding
    		•  0.5033130924527 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle