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Protein Overview: gi|151941280

General Information:
Name(s) found: gi|151941280 [NCBI NR]
Description(s) found:
  • gi|151941280|gb|EDN59658.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae YJM789] [NCBI NR]
    • Organism: Saccharomyces cerevisiae YJM789
    Length: 859 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYKYNCCDD GSGTTVGSVV RFDNVTLLID PGWNPSKVSY EQCIKYWEKV IPEIDVIILS  60
   61 QPTIECLGAH SLLYYNFTSH FISRIQVYAT LPVINLGRVS TIDSYASAGV IGPYDTNKLD 120
  121 LEDIEISFDH IVPLKYSQLV DLRSRYDGLT LLAYNAGVCP GGSIWCISTY SEKLVYAKRW 180
  181 NHTRDNILNA ASILDATGKP LSTLMRPSAI ITTLDRFGSS QPFKKRSKIF KDTLKKGLSS 240
  241 DGSVIIPVDM SGKFLDLFTQ VHELLFESTK INAHTQVPVL ILSYARGRTL TYAKSMLEWL 300
  301 SPSLLKTWEN RNNTSPFEIG SRIKIIAPNE LSKYPGSKIC FVSEVGALIN EVIIKVGNSE 360
  361 KTTLILTKPS FECASSLDKI LEIVEQDERN WKTFPEDGKS FLCDNYISID TIKEEPLSKE 420
  421 ETEAFKVQLK EKKRDRNKKI LLVKRESKKL ANGNAIIDDT NGERAMRNQD ILVENVNGVP 480
  481 PIDHIMGGDE DDDEEEENDN LLNLLKDNSE KSAAKKNTEV PVDIIIQPSA ASKHKMFPFN 540
  541 PAKIKKDDYG TVVDFTMFLP DDSDNVNQNS RKRPLKDGAK TTSPVNEEDN KNEEEDGYNM 600
  601 SDPISKRSKH RASRYSGFSG TGEAENFDNL DYLKIDKTLS KRTISTVNVQ LKCSVVILNL 660
  661 QSLVDQRSAS IIWPSLKSRK IVLSAPKQIQ NEEITAKLIK KNIEVVNMPL NKIVEFSTTI 720
  721 KTLDISIDSN LDNLLKWQRI SDSYTVATVV GRLVKESLPQ VNNHQKTASR SKLVLKPLHG 780
  781 SSRSHKTGAL SIGDVRLAQL KKLLTEKNYI AEFKGEGTLV INEKVAVRKI NDAETIIDGT 840
  841 PSELFDTVKK LVTDMLAKI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..273] PSI-BLAST 10.69897 Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain; Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain
    2 View Details [274..481] MSA 1.17196 View MSA. No confident structure predictions are available.
    3 View Details [482..859] MSA 1.05888 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.97803450114143 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.66507162669272 bayes_pls_golite062009
  • RNA binding
    		•  1.48455378212673 bayes_pls_golite062009
  • catalytic activity
    		•  0.941400907161877 bayes_pls_golite062009
  • protein binding
    		•  0.380466845099285 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle