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Protein Overview: GARL_ECOLI

General Information:
Name(s) found: GARL_ECOLI [Swiss-Prot]
Description(s) found:
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  • pir||B65102 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) [similarity] - Escherichia coli (strain K-12) [NCBI NR]
  • gi|606066|gb|AAA57929.1| ORF_f256 [Escherichia coli] [NCBI NR]
  • gi|1176153|sp|P23522.2|GARL_ECOLI RecName: Full=5-keto-4-deoxy-D-glucarate aldolase; Short=KDGluc aldolase; Short=KDGlucA; AltName: Full=5-dehydro-4-deoxy-D-glucarate aldolase; AltName: Full=2-keto-3-deoxy-D-glucarate aldolase; AltName: Full=2-dehydro-3-d [NCBI NR]
  • gi|10120731|pdb|1DXE|B Chain B, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia Coli [NCBI NR]
  • gi|10120730|pdb|1DXE|A Chain A, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia Coli [NCBI NR]
  • 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) (2-keto-3-deoxyglucarate aldolase) (2-dehydro-3-deoxygalactarate aldolase) (DDG aldolase) (5-keto-4-deoxy-D-glucarate aldolase) (KDGlucA) - Escherichia coli [Swiss-Prot]
  • alpha-dehydro-beta-deoxy-D-glucarate aldolase [Escherichia coli K12]gi|1789514|gb|AAC76160.1| alpha-dehydro-beta-deoxy-D-glucarate aldolase [Escherichia coli K12]gi|606066|gb|AAA57929.1| ORF_f256 [Escherichia coli]gi|7449607|pir||B65102 2-dehydro-3-deo [nrdb_11152004_Chlamydomonas]
  • 2-dehydro-3-deoxyglucarate aldolase (2-keto-3-deoxyglucarate aldolase) (2-dehydro-3-deoxygalactarate aldolase) (DDG aldolase) (5-keto-4-deoxy-D-glucarate aldolase) (KDGlucA) [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Chain A, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia Coli [nr-271106-contam.fasta]
  • Chain B, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia Coli [nr-271106-contam.fasta]
  • 5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli (strain K12) GN=garL PE=1 SV=2 [uniprot-Ecoli-reviewed-110511.fasta]
    • Organism: Escherichia coli
    Length: 256 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNDVFPNKF KAALAAKQVQ IGCWSALSNP ISTEVLGLAG FDWLVLDGEH APNDISTFIP  60
   61 QLMALKGSAS APVVRVPTNE PVIIKRLLDI GFYNFLIPFV ETKEEAELAV ASTRYPPEGI 120
  121 RGVSVSHRAN MFGTVADYFA QSNKNITILV QIESQQGVDN VDAIAATEGV DGIFVGPSDL 180
  181 AAALGHLGNA SHPDVQKAIQ HIFNRASAHG KPSGILAPVE ADARRYLEWG ATFVAVGSDL 240
  241 GVFRSATQKL ADTFKK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. GARL_ECOLI gi|134105085, gi... gi|189095939, gi... gi|60594470, gi|...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..256] PSI-BLAST 58.69897 2-dehydro-3-deoxy-galactarate aldolase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.59838799615646 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.920775369999745 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.5165407619773 bayes_pls_golite062009
  • 2-dehydro-3-deoxyglucarate aldolase activity
    		•  0.476503494662165 bayes_pls_golite062009
  • binding
    		•  0.415920162243587 bayes_pls_golite062009
  • transferase activity
    		•  0.368032846714701 bayes_pls_golite062009
  • lyase activity
    		•  0.0456521871650777 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle