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Protein Overview: gi|149365213, gi...

General Information:
Name(s) found: gi|149365213 [NCBI NR]
gi|149291626 [NCBI NR]
Description(s) found:
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  • gi|149365213|ref|ZP_01887248.1| putative cytochrome c-type biogenesis protein [Yersinia pestis CA88-4125] [NCBI NR]
  • gi|149291626|gb|EDM41700.1| putative cytochrome c-type biogenesis protein [Yersinia pestis CA88-4125] [NCBI NR]
    • Organism: Yersinia pestis CA88-4125
    Length: 656 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPEIGSFLL CLALAISLLL SLYPQWGAAR QDARMMAVGR PLTYGMFAAI TLSFICLIYA  60
   61 FVVNDFTVSY VAANSNSYLP IYYRIAASWG AHEGSLLLWV LLLSCWSLAV ALFSRSMPED 120
  121 AVARVLSVLG MITGGFLLFI ILTSNPFSRT LPDFPIDGRD LNPLLQDVGL IFHPPLLYMG 180
  181 YVGFSVAFAF AIASLMAGRL DSAWARWSRP WTQAAWIFLT LGIVLGSAWA YYELGWGGWW 240
  241 FWDPVENASF MPWLAGTALI HSLAVTEKRG TFKAWTVLLA ITAFSLCLMG TFLVRSGVLV 300
  301 SVHSFASDPA RGMFILAYLV IVIGGSLLLY AVKGAQVRSR TQHEVFSRET FLLGNNVLLI 360
  361 AAMLVVLLGT LLPLVHKQLG LGSISIGEPF FNTMFTWLMA PMALLMGIGP LVRWRRDEPS 420
  421 KLWKRLSVAL VVTLLLSISV PWLLQDSVAG MTVVGLMMAI WVIILTLMEL HERATHRYGF 480
  481 WRGLTHLSRS HWGMVLGHLG VAVTVIGIAF SQNYSVERDV RMKAGDSIDI HDYHFTFRDV 540
  541 HDIKGPNYTG GVGIIDVTRN GKLEATLHAE KRYYSVARSM MTEAAIDGGL TRDLYAALGE 600
  601 ELGDGSWAVR LYYKPFVRWI WFGGIFMAVG GIFCMLDPRY RMSKKLKRGA IPEAES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] deduced N/A No confident structure predictions are available.
    2 View Details [111..301] MSA 14.418995 View MSA. No confident structure predictions are available.
    3 View Details [302..475] MSA 3.303992 View MSA. No confident structure predictions are available.
    4 View Details [476..656] FFAS03 0.958 TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  2.71147761865804 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.37456571378489 bayes_pls_golite062009
  • DNA binding
    		•  1.29551294358449 bayes_pls_golite062009
  • protein binding
    		•  0.71093987479987 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.430797581413272 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle