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Protein Overview: SO2355

General Information:
Name(s) found: SO2355 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • universal stress protein family [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 310 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDYQKILVV VDPTTENQVA LARAVTLASK SNAHVTVFLS IFDFSYEMTS ILSSQEREAM  60
   61 RQGVIDQRVA WIQDLLAPYN HLGLNIDTQV IWHNRPFESI INHAIAGQYD LIVKGTHAHD 120
  121 KLKAVIFTPT DWHLMRKAPV PVLMVKDHDW PETGKILCAV NVATEDTDHQ MLNGKIIEHA 180
  181 KDLAGKFAAE VHLVNGFPGT PVNLAIELPD FDAQTYNDTI RLQHEQRVQY LADAYGIDKQ 240
  241 NCHVKEGLPE DVIPELAEQL DAELVILGTV GRTGFSAALI GNTAEHVIDS INCDLLAIKP 300
  301 DGYKSPLEEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..161] PSI-BLAST 24.221849 "Hypothetical" protein MJ0577
    2 View Details [162..310] PSI-BLAST 18.045757 No description for 2gm3A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.151149560052223 bayes_pls_golite062009
  • catalytic activity
    		•  0.062439821475123 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.151149560052223 bayes_pls_golite062009
  • catalytic activity
    		•  0.062439821475123 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle