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Protein Overview: SO1468

General Information:
Name(s) found: SO1468 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • conserved hypothetical protein [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 353 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITYHKGNIL HDQADAIINT VNTVGVMGKG LALQFKKAFP DNFKVYKKAC DDKSLVTGTV  60
   61 LPVSLDSINS PFYIINFPTK VHWKGQSKLE YIESGLESLK AEVCRLDLKS VAIPALGSGL 120
  121 GGLPWYEVEQ VIRSSLAELP DVDWRIYPPQ TAPSAELMPN QTRRPRMTIG RAAVLGLIDR 180
  181 YVSTGFGYRL SLLEVQKLVY FLTVVGEPLN KVVFKKHHYG PYADVLRHVL DKMEGHFIYG 240
  241 FADGLNKPET PIDLKDDAAK EALDFLAQHP DTKQRFDKVA KLIEGYESQN GMELLSTVHW 300
  301 VVTQESNPAL SAEELVQRVH SWNARKAAMK PAHILAAWQR LSEQGWLELK AQV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] PSI-BLAST 43.154902 Crystal Structure of the Putative Phosphatase of Escherichia coli, Northeast Structural Genomoics Target ER58
    2 View Details [165..353] MSA 2.024996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle