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Protein Overview: SO1149

General Information:
Name(s) found: SO1149 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
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  • gi|81462958|sp|Q8EHR8.1|RLMI_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase I; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rlmI; AltName: Full=23S rRNA m5C1962 methyltransferase [NCBI NR]
  • Ribosomal RNA large subunit methyltransferase I OS=Shewanella oneidensis GN=rlmI PE=3 SV=1 [Swiss-Prot]
  • conserved hypothetical protein [shew_pnnl_plus_contams_psm.fasta]
  • Ribosomal RNA large subunit methyltransferase I OS=Shewanella oneidensis (strain MR-1) GN=rlmI PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Shewanella oneidensis
    Length: 396 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRIKLKPG REKSLERRHP WVFSNGIHNV KGKPEPGQTV DVVAHDGHWL GRGAWSGESQ  60
   61 IQVRVWTFDR EEEIDREFFK RRILRAQAGR DDLIREQGLT GYRLIAAESD GLPGITIDKY 120
  121 ANVLVCQLLS MGADVWRDTI VDVLAELYPD CAIYERSDVD SRKKEGLAST MGLLHGTLPE 180
  181 MPLIIEENGI KIAVDVTKGH KTGFYLDQRD NRAIAARFVK GKSVLNCFCY TGTFGLYAAK 240
  241 AGAASIENVD VSSLALDTAR LNMRVNGLSD DNVHYNEADV FKLLRQYRDE GKTFDVIVLD 300
  301 PPKFADNKSQ LNGACRGYKD INMIALQLLN PGGVLLTFSC SGLMPADLFQ KIVADAALDA 360
  361 KREIQFIERL SQASDHPIGS AFPEGFYLKG LVARVW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..396] PSI-BLAST 65.69897 Crystal Structure of PH1915 (APC 5817): A Hypothetical RNA Methyltransferase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methyltransferase activity
    		•  4.15445027778357 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  4.09362182773099 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.07153733729662 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.39429041855776 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  3.07428840534971 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  3.0539218951403 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  3.01384869242051 bayes_pls_golite062009
  • transferase activity
    		•  2.22303238506686 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.90505369820945 bayes_pls_golite062009
  • rRNA (adenine) methyltransferase activity
    		•  1.83964463328968 bayes_pls_golite062009
  • rRNA (adenine-N6,N6-)-dimethyltransferase activity
    		•  1.75675289134467 bayes_pls_golite062009
  • DNA-methyltransferase activity
    		•  1.63765148226572 bayes_pls_golite062009
  • arginine N-methyltransferase activity
    		•  1.6030970825293 bayes_pls_golite062009
  • protein-arginine N-methyltransferase activity
    		•  1.6030970825293 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  1.12859857407629 bayes_pls_golite062009
  • rRNA (guanine) methyltransferase activity
    		•  1.10713374933008 bayes_pls_golite062009
  • histone-arginine N-methyltransferase activity
    		•  1.05897361334523 bayes_pls_golite062009
  • site-specific DNA-methyltransferase (adenine-specific) activity
    		•  0.703178429468566 bayes_pls_golite062009
  • protein-arginine omega-N monomethyltransferase activity
    		•  0.639377525568296 bayes_pls_golite062009
  • O-methyltransferase activity
    		•  0.250946859465502 bayes_pls_golite062009
  • protein-arginine omega-N asymmetric methyltransferase activity
    		•  0.130104080746388 bayes_pls_golite062009
  • histone methyltransferase activity (H4-R3 specific)
    		•  0.130042730841119 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle