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Protein Overview: SO0952

General Information:
Name(s) found: SO0952 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • single-stranded-DNA-specific exonuclease RecJ [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 574 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHKIIRRPT VDDSHLPTHL PPLLRQLYAR RGVLPSECEL VLKGLLRPDT MKGLDLAAKL  60
   61 IADAMQLDKS ILIVGDFDAD GATSTSVCIL ALRMMGASKV DYLIPNRFDY GYGLSPEIVA 120
  121 VAASKQAQLL ITVDNGISSI EGVAAAKAFG MQVVITDHHL PGHELPKADA IVNPNQPGCQ 180
  181 FASKSIAGVG VAFYLMTALR AELRARNWYQ ARGIAEPNLG TLLDIVALGT VADVVSLDTN 240
  241 NRILVEAGLQ RVRSGRCRVG ITALLEVAKR NPARIVASDF GFAVGPRLNA AGRLDEMALG 300
  301 VETLLCEDMM YARRMAAELD SLNQERRELE VGMQQEALKS LEYLKLNEEQ LPWGIALFQE 360
  361 DWHQGVIGIL ASRIKDKYHR PVIAFADAGN GEIKGSARSI KGLHMRDLLE LVNSRHPGLI 420
  421 SKFGGHAMAA GLTLKSGGFA TFAKAYDDAV REQLKPEQLT GELWSDGELT PTELTLEIAQ 480
  481 LLRNAGPWGQ SFEEPLFDGY FKIIQQRIVG DRHLKLVLET QCGTVMLDAI AFNVALHTWP 540
  541 DATIQHARIV YKLDVNEYRG NFTLQLMVEQ IEPM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..489] PSI-BLAST 95.0 Exonuclease RecJ
    2 View Details [490..574] MSA 1.216979 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • deoxyribonuclease activity
    		•  3.0051764426766 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  2.95229098929295 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  2.9500987818733 bayes_pls_golite062009
  • single-stranded DNA specific exodeoxyribonuclease activity
    		•  2.72110588435439 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  2.59454342567539 bayes_pls_golite062009
  • exonuclease activity
    		•  2.57506733103287 bayes_pls_golite062009
  • catalytic activity
    		•  2.15198373249096 bayes_pls_golite062009
  • hydrolase activity
    		•  1.87485052902921 bayes_pls_golite062009
  • nuclease activity
    		•  1.375718110904 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.17433205668743 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle