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Protein Overview: SO3747

General Information:
Name(s) found: SO3747 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
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  • gi|34395567|sp|Q8EAZ0.1|CVRA_SHEON RecName: Full=Cell volume regulation protein A homolog [NCBI NR]
  • Cell volume regulation protein A homolog OS=Shewanella oneidensis GN=cvrA PE=3 SV=1 [Swiss-Prot]
  • sodium/hydrogen exchanger family/TrkA domain protein [Shewanella oneidensis MR-1]gi|24350037|gb|AAN56730.1| sodium/hydrogen exchanger family/TrkA domain protein [Shewanella oneidensis MR-1]gi|34395567|sp|Q8EAZ0|CVRA_SHEON Cell volume regulation protein [nrdb_11152004_Chlamydomonas]
  • sodium/hydrogen exchanger family/TrkA domain protein [shew_pnnl_plus_contams_psm.fasta]
  • Cell volume regulation protein A homolog [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis
    Length: 574 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDADSINSFF LIGALLTAVS VLLSPMSSRL GIPILLIFLA VGILAGEDGP GGILFDDYST  60
   61 AYLVSNFALA IILLDGGMRT RVASFRVALW PALSLATFGV AITTSITGVM AAWLFDLHWL 120
  121 QGLLVGAIVG STDAAAVFSL LKGRSLNERV GATLEIESGS NDPMAVFLTV TLIAILANVG 180
  181 AELSASFMLI SFIKQFGLGV LLGLGGGWLL WKLVNVSKLA EGLYSILVLS GGLMIYATSN 240
  241 KLGGSGILSI YLVGLFLGNK PTRGRHAILN VLDGMTWVSQ IGMFLVLGLL LTPSDLLDIW 300
  301 LPGLALAFGM ILFARPLAVW LSLLPFKSFG SRDRWFISWV GLRGAVPIIL AVFPMMAGLP 360
  361 GAQLYFNLAF FVVIVSLLVQ GASLTTAARL AKVELPPKPL PISRSGVEIY PKSEWEVFVY 420
  421 CLSESKWCIG EPLKRLAMPD GTRIAAVFRN NTLLHPSGST CLEAGDILCV LGQEKSLEAL 480
  481 SNLFSQAPET DEVSRFFGDF FIDTEVKLAD LAPIYGLTLD DETGAMTVAD LVALELGAHP 540
  541 VLGDQFLWQS LHWVVAGLYE GKVTNVGIRL PADA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..197] MSA 10.045995 View MSA. No confident structure predictions are available.
    2 View Details [198..396] MSA 2.158994 View MSA. No confident structure predictions are available.
    3 View Details [397..487] FFAS03 1.02 Crystal structure of putative potassium channel related protein from Pyrococcus horikoshii
    4 View Details [488..574] PSI-BLAST 20.30103 No description for 2oaiA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • metal ion transmembrane transporter activity
    		•  3.20360029620216 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.84728629370153 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  2.83549234777732 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.62479915553705 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  2.09656284183303 bayes_pls_golite062009
  • transporter activity
    		•  1.41639006729672 bayes_pls_golite062009
  • di-, tri-valent inorganic cation transmembrane transporter activity
    		•  1.21441469552217 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13866512878605 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.917464827903503 bayes_pls_golite062009
  • transition metal ion transmembrane transporter activity
    		•  0.650200302890589 bayes_pls_golite062009
  • binding
    		•  0.57037105268889 bayes_pls_golite062009
  • catalytic activity
    		•  0.074501016141151 bayes_pls_golite062009
  • magnesium ion transmembrane transporter activity
    		•  0.0317663613487458 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle