YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: Cpsf160-PA

General Information:
Name(s) found: Cpsf160-PA / FBpp0089163 [FlyBase]
Description(s) found:
Found 21 descriptions.
SHOW ALL
  • The gene Cleavage and polyadenylation specificity factor 160 is referred to in FlyBase by the symbol Dmel\Cpsf160 (CG10110, FBgn0024698). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:10386194..10390978. It has the cytological map location 51A4. There is experimental evidence that it has the molecular function</span>: protein binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: mRNA polyadenylation; mRNA cleavage. 9 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/first instar larval cuticle; hypostomal sclerite. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1455 amino acids

    Gene Ontology:
    Cellular Component: mRNA cleavage and polyadenylation specificity factor complex [ISS][NAS]
    Biological Process: mRNA polyadenylation [ISS][NAS]
    mRNA cleavage [ISS][NAS]
    Molecular Function: protein binding [IPI]
    mRNA binding [NAS]
    mRNA 3'-UTR binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSMCKQTHS ATAVEFSIAC RFFNNLDENL VVAGANVLKV YRIAPNVEAS QRQKLNPSEM  60
   61 RLAPKMRLEC LATYTLYGNV MSLQCVSLAG AMRDALLISF KDAKLSVLQH DPDTFALKTL 120
  121 SLHYFEEDDI RGGWTGRYFV PTVRVDPDSR CAVMLVYGKR LVVLPFRKDN SLDEIELADV 180
  181 KPIKKAPTAM VSRTPIMASY LIALRDLDEK IDNVLDIQFL HGYYEPTLLI LYEPVRTCPG 240
  241 RIKVRSDTCV LVAISLNIQQ RVHPIIWTVN SLPFDCLQVY PIQKPIGGCL VMTVNAVIYL 300
  301 NQSVPPYGVS LNSSADNSTA FPLKPQDGVR ISLDCANFAF IDVDKLVISL RTGDLYVLTL 360
  361 CVDSMRTVRN FHFHKAAASV LTSCICVLHS EYIFLGSRLG NSLLLHFTEE DQSTVITLDE 420
  421 VEQQSEQQQR NLQDEDQNLE EIFDVDQLEM APTQAKSRRI EDEELEVYGS GAKASVLQLR 480
  481 KFIFEVCDSL MNVAPINYMC AGERVEFEED GVTLRPHAES LQDLKIELVA ATGHSKNGAL 540
  541 SVFVNCINPQ IITSFELDGC LDVWTVFDDA TKKSSRNDQH DFMLLSQRNS TLVLQTGQEI 600
  601 NEIENTGFTV NQPTIFVGNL GQQRFIVQVT TRHVRLLQGT RLIQNVPIDV GSPVVQVSIA 660
  661 DPYVCLRVLN GQVITLALRE TRGTPRLAIN KHTISSSPAV VAISAYKDLS GLFTVKGDDI 720
  721 NLTGSSNSAF GHSFGGYMKA EPNMKVEDEE DLLYGDAGSA FKMNSMADLA KQSKQKNSDW 780
  781 WRRLLVQAKP SYWLVVARQS GTLEIYSMPD MKLVYLVNDV GNGSMVLTDA MEFVPISLTT 840
  841 QENSKAGIVQ ACMPQHANSP LPLELSVIGL GLNGERPLLL VRTRVELLIY QVFRYPKGHL 900
  901 KIRFRKMDQL NLLDQQPTHI DLDENDEQEE IESYQMQPKY VQKLRPFANV GGLSGVMVCG 960
  961 VNPCFVFLTF RGELRIHRLL GNGDVRSFAA FNNVNIPNGF LYFDTTYELK ISVLPSYLSY1020
 1021 DSVWPVRKVP LRCTPRQLVY HRENRVYCLI TQTEEPMTKY YRFNGEDKEL SEESRGERFI1080
 1081 YPIGSQFEMV LISPETWEIV PDASITFEPW EHVTAFKIVK LSYEGTRSGL KEYLCIGTNF1140
 1141 NYSEDITSRG NIHIYDIIEV VPEPGKPMTK FKIKEIFKKE QKGPVSAISD VLGFLVTGLG1200
 1201 QKIYIWQLRD GDLIGVAFID TNIYVHQIIT VKSLIFIADV YKSISLLRFQ EEYRTLSLAS1260
 1261 RDFNPLEVYG IEFMVDNSNL GFLVTDAERN IIVYMYQPEA RESLGGQKLL RKADYHLGQV1320
 1321 VNTMFRVQCH QKGLHQRQPF LYENKHFVVY GTLDGALGYC LPLPEKVYRR FLMLQNVLLS1380
 1381 YQEHLCGLNP KEYRTLKSSK KQGINPSRCI IDGDLIWSYR LMANSERNEV AKKIGTRTEE1440
 1441 ILGDLLEIER LASVF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..186] MSA 4.089987 View MSA. No confident structure predictions are available.
    2 View Details [187..236] MSA 1.090993 View MSA. No confident structure predictions are available.
    3 View Details [237..364] MSA 1.093993 View MSA. No confident structure predictions are available.
    4 View Details [365..473] deduced N/A No confident structure predictions are available.
    5 View Details [474..744] PSI-BLAST 44.0 Crystal Structure of the DDB1 BPB Domain
    6 View Details [745..1455] PSI-BLAST 146.0 Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.65

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle