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Protein Overview: COL16_ARATH

General Information:
Name(s) found: COL16_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|53749166|gb|AAU90068.1| At1g25440 [Arabidopsis thaliana] [NCBI NR]
  • gi|52782786|sp|Q8RWD0.2|COL16_ARATH RecName: Full=Zinc finger protein CONSTANS-LIKE 16 [NCBI NR]
  • gi|30689221|ref|NP_173915.2| zinc finger (B-box type) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110740969|dbj|BAE98579.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16 [Swiss-Prot]
  • Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2 [Swiss-Prot]
  • Zinc finger protein CONSTANS-LIKE 16gi|53749166|gb|AAU90068.1| At1g25440 [Arabidopsis thaliana]gi|30689221|ref|NP_173915.2| zinc finger (B-box type) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger protein CONSTANS-LIKE 16 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc finger (B-box type) family protein | chr1:8933926-8935271 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Zinc finger protein CONSTANS-LIKE 16 [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g25440 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | B-box type zinc finger protein with CCT domain | chr1:8933939-8935284 REVERSE LENGTH=417 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 417 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    Biological Process: regulation of transcription [TAS]
    Molecular Function: zinc ion binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK  60
   61 TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK KNNSSIFHDL VPDISIEDQT 120
  121 DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP 180
  181 TDMELEEFAA DVETLLGRGL DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF 240
  241 DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD 300
  301 SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG 360
  361 REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRASLAAAA SPLGVNY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..137] FFAS03 1.04 No description for 2dfyX was found.
    2 View Details [138..238] deduced N/A No confident structure predictions are available.
    3 View Details [239..417] MSA 21.161996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.52

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle