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Protein Overview: COL6_ARATH

General Information:
Name(s) found: COL6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|52840167|sp|Q8LG76.2|COL6_ARATH RecName: Full=Zinc finger protein CONSTANS-LIKE 6 [NCBI NR]
  • gi|20148425|gb|AAM10103.1| putative B-box zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18409053|ref|NP_564932.1| zinc finger (B-box type) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15451090|gb|AAK96816.1| putative B-box zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2 [Swiss-Prot]
  • Zinc finger protein CONSTANS-LIKE 6gi|20148425|gb|AAM10103.1| putative B-box zinc finger protein [Arabidopsis thaliana]gi|15451090|gb|AAK96816.1| putative B-box zinc finger protein [Arabidopsis thaliana]gi|18409053|ref|NP_564932.1| zinc finger (B-box t [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger protein CONSTANS-LIKE 6 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc finger (B-box type) family protein | chr1:25712994-25714412 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative B-box zinc finger protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Zinc finger protein CONSTANS-LIKE 6 [nr-271106-contam.fasta]
  • transcription factor/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | B-box type zinc finger protein with CCT domain | chr1:25709331-25710749 REVERSE LENGTH=406 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 406 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: regulation of transcription [TAS]
    Molecular Function: zinc ion binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK  60
   61 SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF HDLVPEMSTE DQAESYEVEE 120
  121 QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL 180
  181 AQFTADVETL LGGGDREFHS IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE 240
  241 ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS 300
  301 TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR 360
  361 VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS SIGVAH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] FFAS03 0.985 No description for 2dipA was found.
    2 View Details [95..270] MSA 1.13298 View MSA. No confident structure predictions are available.
    3 View Details [271..406] MSA 22.160995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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