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Protein Overview: orf19.1578, orf1...

General Information:
Name(s) found: orf19.1578 [Other_Candida_Albicans_na_02-26-2007_reversed.fasta]
orf19.9151 [Other_Candida_Albicans_na_02-26-2007_reversed.fasta]
Description(s) found:
Found 2 descriptions.
SHOW ALL
  • orf19.1578 CGDID:CAL0005606 Assembly 19, Contig19-10119 (272481, 277649) CDS, translated using codon table 12 (1722 residues)||Predicted ORF in Assemblies 19 and 20 [Other_Candida_Albicans_na_02-26-2007_reversed.fasta]
  • orf19.1578 CGDID:CAL0005606 Assembly 19, Contig19-20119 (272233, 277401) CDS, translated using codon table 12 (1722 residues)||Predicted ORF in Assemblies 19 and 20 [Other_Candida_Albicans_na_02-26-2007_reversed.fasta]
    • Organism: Candida albicans
    Length: 1722 amino acids

    Gene Ontology:
    Cellular Component: small-subunit processome [IEA]
    nucleolus [IEA]
    90S preribosome [IEA]
    Biological Process: endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [IEA]
    endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [IEA]
    endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [IEA]
    endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [IEA]
    Molecular Function: poly(U) RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTSKSVLS NKEFSFPRGG SKPLSALEVK EISNEATKDV LFEQAESNKR SNSNKSDQPK  60
   61 KKHKKSSKNK SKNDKNDNDE ETTQSVTIET FNFKNLVSGS TVLGQIKTIN KLDIGLALGD 120
  121 NLTGYIPITS ICPQVTELIE KFEQEESEEE EEEEESDSEE TKSATFKSKT EKEFPDLFKI 180
  181 FKLGSWLKAK ITTSHEDYKN KKRIELTIEP ESVNENLEVD DLIVNNILQC SVKSIEDHGI 240
  241 ILDTGKQEYS GFISNKELTN AQIDVNTIVP GLVILCSIAS KPSGRTINLK PTTATVSAKK 300
  301 TTVSTISSID SIQPGVIVDA LINDVTENGL VTKVYGLVDG TIALSQIQNF ELKELKHKYA 360
  361 IGSTVKARVL AVLLKNGTKK LILSILPHVL QLGDDSSQTE ALEAFPIGHV FDQVKVIGND 420
  421 KHYVYVSFGS SSLFGQIHQS KFDDNKSLLD YSIGSTHKSR VIGFNEVDNL LILTFESKVI 480
  481 DAEYLNVRDV PIGKLLPNVE ILKVLEDGVG INVKFFDEFK GFVPGNQMSD IKLVYPERKF 540
  541 RVGTKTKGRL LNYNGKRALV TFRKALVNLE DDEILSDIDQ AEIGFKTNAI VEKFVPNGCI 600
  601 VSFFGNLKAF LPKTEISETF VQDASSYLKI GQIVKVRILD VNKEQKRLVV TLKQSSELSN 660
  661 AQKNEISKLV SGKSIVKTVV VEKTKDSVLV ELEGSHLRGV IYDGQLSDGN YEQNRALAKR 720
  721 LAIGETLEVL ILDKDLKART VIATAKKSLI DASKSKSFPV EFSDIAVNDV VRGYVKSVTS 780
  781 LGLFVTFTGR LTGLILAKYV TKNANEDLSK KFHKYQSINC RVLSVDKENE RFLLTLNNSS 840
  841 SFTKDDEQLI KPIDATKKIV ADYQPGETTK VVIKAVKGTQ LNVQLADNLQ GRVDITQCFK 900
  901 SIKDIKNLHQ PLASSFQKGE TLDVKVIGIH DAKNHTFLPI THRKSNRTTI LELSLNNPQI 960
  961 NNKLLTDLKL ADFKQGDEVL AFVNNITNGM VWVSISPTIK GRIPMLDLTE DGSIFQDIDN1020
 1021 KLPIGNAINV KVKQVDLQHQ ILVLTARKNF IEKFEDVRQD QTYPARIIKI KPNHVLVELG1080
 1081 NNVIASSFVT DALNDYSDKL DHVFNVNDYV SAKVLDIDST NKRISVSLRT DKAGSDKVIN1140
 1141 SISDLTRGQV IKGFVKNISN NGVYVSLGRS IYALVRVSDL SDSYLKDWQN FFKPNQPVIG1200
 1201 KIVNCKQEGR ILMTLKESEV NGELKIMKTF DDLQIGDIFE GTVTSTTDFG VFVKLDGTVN1260
 1261 VSGLCHHSEI SENDVDNVKS LFGTGDRVKV KILKIDSEKR QLSLGMKASY FITDSGKEDN1320
 1321 DDEDVEMEDA SEVGEEEEEG EDHEESESEE EKEEEDDDDD DIMDVDDNDE NDSEDEEQSA1380
 1381 DESQEKSLST GLSTNGFDWT ASILDQADED EESSDDDTDF TESSKKKSKK KSKSAVEDKT1440
 1441 GDLNTRAPQS TADFERLLIG NPNSSILWMN YMSFQLQLSE VDKAREIGER ALKTINYREE1500
 1501 QEKLNIWIAL LNLENTFGTD ESLEDTFKKS IQYMDSFTMH EKLVNIYKMS EKFDQAKQLF1560
 1561 NRMTKKFGKV LNTWVLYGSF LLDQNSQDEM HEILAKALNI LPKREHIELV KKFAQLEFQK1620
 1621 GDPEQGRSLF EGLVADAPKR IDLWNVYIDQ EIKQDNKTSD EDDTDIKSKV EDLFERVLSK1680
 1681 KITRKQAKFF FNKWLNYEED KQDENMIARV KSKAAEYVQN NS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle