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Protein Overview: ARFP_ARATH

General Information:
Name(s) found: ARFP_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|46576629|sp|Q93YR9.1|ARFP_ARATH RecName: Full=Auxin response factor 16 [NCBI NR]
  • gi|20259589|gb|AAM14137.1| putative transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|18417527|ref|NP_567841.1| ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|16604695|gb|AAL24140.1| putative transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1 [Swiss-Prot]
  • putative transcription factor [Arabidopsis thaliana]gi|16604695|gb|AAL24140.1| putative transcription factor [Arabidopsis thaliana]gi|46576629|sp|Q93YR9|ARFP_ARATH Auxin response factor 16gi|18417527|ref|NP_567841.1| transcriptional factor B3 family pr [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Auxin response factor 16 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor | chr4:14703375-14705570 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ARF16; transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Auxin response factor 16 [nr-271106-contam.fasta]
  • | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 670 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: cell division [IGI]
    root cap development [IGI][IMP]
    pattern specification process [IDA]
    response to auxin stimulus [IEP]
    Molecular Function: miRNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI  60
   61 PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE YGDGEDSNGF ESNSEKTPSF 120
  121 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP 180
  181 RRHLLTTGWS NFVNQKKLVA GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG 240
  241 GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS 300
  301 EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL 360
  361 LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR KKMRLPQHPD YNNLINSIPV 420
  421 PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL 480
  481 QLSPSLGLRN IDTKNEKGFC FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT 540
  541 ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL 600
  601 DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL 660
  661 TEQGSESVVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] deduced N/A No confident structure predictions are available.
    2 View Details [104..228] PSI-BLAST 35.0 Solution Structure of the B3 DNA-Binding Domain of RAV1
    3 View Details [229..423] MSA 3.11699 View MSA. No confident structure predictions are available.
    4 View Details [424..501] deduced N/A No confident structure predictions are available.
    5 View Details [502..670] FFAS03 0.967 Solution structure of RSGI RUH-024, a PB1 domain in human cDNA, KIAA0049


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle