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Protein Overview: dsl-6

General Information:
Name(s) found: dsl-6 / CE36597 [WormBase]
Description(s) found:
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  • WBGene00001108 locus:dsl-6 Delta-like protein status:Confirmed UniProt:O45602 protein_id:CAB07218.2 [WormBase]
  • gi|71990243|ref|NP_502148.2| Delta/Serrate/Lag-2 domain family member (dsl-6) [Caenorhabditis elegans] [NCBI NR]
  • gi|50507827|emb|CAB07218.2| C. elegans protein H02I12.4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Hypothetical protein H02I12.4 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE36597 WBGene00001108 locus:dsl-6 EGF-like domain status:Confirmed TR:O45602 protein_id:CAB07218.2 [wormpep150.fasta]
  • 36597 WBGene00001108 locus:dsl-6 EGF-like domain status:Confirmed TR:O45602 protein_id:CAB07218.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE36597 WBGene00001108 locus:dsl-6 EGF-like domain status:Confirmed UniProt:O45602_CAEEL protein_id:CAB07218.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE36597 WBGene00001108 locus:dsl-6 EGF-like domain status:Confirmed UniProt:O45602_CAEEL protein_id:CAB07218.2| [wormORF-contam.fasta]
  • Delta/Serrate/Lag-2 domain family member (dsl-6) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE36597 WBGene00001108 locus:dsl-6 EGF-like domain status:Confirmed UniProt:O45602 protein_id:CAB07218.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE36597 WBGene00001108 locus:dsl-6 status:Confirmed UniProt:O45602 protein_id:CAB07218.2 Delta-like protein [wormpep246-ecoli-contam.fasta]
  • Delta-like protein OS=Caenorhabditis elegans GN=dsl-6 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 303 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: cell communication [IEALink to PubMed article]
    Molecular Function: calcium ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIIKYTVL TLFYAQLINC SGYLEVHLRS PHEQPATVNI STDVQNEESN VFEVILKPNV  60
   61 VFNVTRIPVD FNKTYNLIIK SEANDGKSKM TMESNLTPRV GLISPIQVTR TFDGLRIIIE 120
  121 CDENWFGEKC DVFCDNIEQR LHGKRCNYRG VPSCLNMFTG AGCMKMITPM DCSCKNNGKC 180
  181 VDSAETPICE CTRGFKGDTC EEMHETIKAA INVQQEEIGC GGSIHNSIME NLVLNQMREV 240
  241 KQDTMFQLLR SLVGAIFGAI SSVLPIDGTL GNAACNNSLV DSVSELDGSG VFPEEGSGIT 300
  301 FLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..303] PSI-BLAST 9.69897 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.44119144078508 bayes_pls_golite062009
  • receptor binding
    		•  1.40618339011373 bayes_pls_golite062009
  • protein binding
    		•  1.15716342217655 bayes_pls_golite062009
  • growth factor activity
    		•  0.25853515067422 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle