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Protein Overview: SDN2_ARATH

General Information:
Name(s) found: SDN2_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 466 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    exonuclease activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDVLATAEG VVLVKLVKVA QKLGLKGENG TWKEFLDFYD KQLGSSSLSD PSKRRKDDLV  60
   61 AFLTTLKKKE DLQLLAKSLK LDNDVFEKFK KKSLDETAEQ RLVRMTLTHD EYPLDYLFPS 120
  121 NAEDWVRTGL GKKKMEPTKI EMIAIDCEMV LCEDGSEAVV RVAAVDRDLK VILDEFVKPN 180
  181 QPVVDYRTFI TGLTAQDLEK ATISVVDIQE KLLMFISEDT ILVGQSLNHD LKVLKVDHAR 240
  241 VIDTSLVFKY NYDGTRRPLR LKRPSLNYLC KCILGYEVQK EGVPHNCVHD AEAAMKLVLA 300
  301 ILDNGAETSV PLSKEMLEAE KSKLYLHRIP CNVPYEELNG VVSRDIPHEV KPSKKQDRHY 360
  361 YSAIVVFKSP EEANQAFENI AGDFGKDSRG LSQKQIFLEP SSSEPRLYVL VRKMVEDDLV 420
  421 GEVIAEENNA SSKKRKRENH SKGTRDRRRC KPLSRRKQRS NVKRRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] MSA 1.244991 View MSA. No confident structure predictions are available.
    2 View Details [136..326] PSI-BLAST 29.0 human ISG20
    3 View Details [327..466] FFAS03 0.967 Hu antigen C (Huc)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle