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Protein Overview: IF62_ARATH

General Information:
Name(s) found: IF62_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7263550|emb|CAB81587.1| eukaryotic translation initiation factor 6 (EIF-6)-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|32189303|gb|AAP75806.1| At3g55620 [Arabidopsis thaliana] [NCBI NR]
  • gi|22135944|gb|AAM91554.1| eukaryotic translation initiation factor 6 (EIF-6)-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15228161|ref|NP_191121.1| emb1624 (embryo defective 1624); ribosome binding / translation initiation factor [Arabidopsis thaliana] [NCBI NR]
  • pir||T47701 translation initiation factor eIF-6-like protein [imported] - Arabidopsis thaliana [NCBI NR]
  • Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1 [Swiss-Prot]
  • (Q9M060) Eukaryotic translation initiation factor 6 (EIF-6)-like protein (At3g55620) [athaliana3702.FASTAC.txt]
  • At3g55620 [Arabidopsis thaliana]gi|22135944|gb|AAM91554.1| eukaryotic translation initiation factor 6 (EIF-6)-like protein [Arabidopsis thaliana]gi|7263550|emb|CAB81587.1| eukaryotic translation initiation factor 6 (EIF-6)-like protein [Arabidopsis thal [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Eukaryotic translation initiation factor 6 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EMB1624 | EMB1624 (EMBRYO DEFECTIVE 1624); translation initiation factor | chr3:20645560-20647291 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At3g55620 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • EMB1624; translation initiation factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • eukaryotic translation initiation factor 6 (EIF-6)-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: emb1624 | Translation initiation factor IF6 | chr3:20634581-20636312 FORWARD LENGTH=245 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 245 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    Biological Process: embryonic development ending in seed dormancy [NAS]
    translational initiation [ISS]
    Molecular Function: translation initiation factor activity [ISS]
    ribosome binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRLQFENN CEVGVFSKLT NAYCLVAIGG SENFYSAFES ELADVIPIVK TSIGGTRIIG  60
   61 RLCAGNKNGL LVPHTTTDQE LQHLRNSLPD QVVVQRIDER LSALGNCIAC NDYVALAHTD 120
  121 LDKETEEIIA DVLGVEVFRQ TIAGNILVGS YCALSNKGGM VHPHTSVEDL EELSTLLQVP 180
  181 LVAGTVNRGS EVIAAGMTVN DWTSFCGSDT TATELSVIDS IFKLREAQPS SIVDEMRKSL 240
  241 IDTYV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..245] PSI-BLAST 104.0 Ribosome anti-association factor eIF6 (aIF6)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • translation initiation factor activity
    		•  2.82313826209658 bayes_pls_golite062009
  • ribosomal large subunit binding
    		•  2.29551693750603 bayes_pls_golite062009
  • binding
    		•  1.48640777619976 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.14138534491569 bayes_pls_golite062009
  • hydrolase activity
    		•  1.05437300113124 bayes_pls_golite062009
  • catalytic activity
    		•  0.889920589881492 bayes_pls_golite062009
  • protein binding
    		•  0.21271994410782 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle