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Protein Overview: PAPS1_ARATH

General Information:
Name(s) found: PAPS1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9665075|gb|AAF97277.1|AC034106_20 Strong similarity to nuclear poly(A) polymerase from Arabidopsis thaliana gb|AF255297 and contains a Nucleotidyltransferase PF|01909 domain. ESTs gb|AV536592, gb|AV553256, gb|AV561630, gb|AV532289 come from this gene [NCBI NR]
  • gi|42562141|ref|NP_173240.2| nucleotidyltransferase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|32527642|gb|AAP86214.1| poly(A) polymerase [Arabidopsis thaliana] [NCBI NR]
  • gi|29029092|gb|AAO64925.1| At1g17980 [Arabidopsis thaliana] [NCBI NR]
  • pir||B86315 F2H15.20 protein - Arabidopsis thaliana [NCBI NR]
  • gi|110743114|dbj|BAE99449.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana GN=PAPS1 PE=1 SV=1 [Swiss-Prot]
  • (Q9LMT2) F2H15.20 protein (At1g17980) (Poly(A) polymerase) [athaliana3702.FASTAC.txt]
  • poly(A) polymerase [Arabidopsis thaliana]gi|29029092|gb|AAO64925.1| At1g17980 [Arabidopsis thaliana]gi|25348464|pir||B86315 F2H15.20 protein - Arabidopsis thalianagi|42562141|ref|NP_173240.2| nucleotidyltransferase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nucleotidyltransferase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | nucleotidyltransferase family protein | chr1:6187735-6191411 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • poly(A) polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g17980 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Strong similarity to nuclear poly(A) polymerase from Arabidopsis thaliana gb|AF255297 and contains a Nucleotidyltransferase PF|01909 domain. ESTs gb|AV536592, gb|AV553256, gb|AV561630, gb|AV532289 come from this gene [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding / nucleotidyltransferase/ polynucleotide adenylyltransferase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:6187742-6191418 REVERSE LENGTH=713 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g17980 OS=Arabidopsis thaliana GN=F2H15.20 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 713 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: RNA polyadenylation [IDA]
    Molecular Function: nucleotidyltransferase activity [ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD  60
   61 QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG PGADIDTLCV GPRHATREGD 120
  121 FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS 180
  181 ILQNADEQTV RSLNGCRVTD QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN 240
  241 WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD 300
  301 RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF 360
  361 EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH FKMLHCHPHP HDFQDTSRPL 420
  421 HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF 480
  481 VFPGGVRPSH TSKGTWDSNR RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK 540
  541 WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP 600
  601 ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF 660
  661 EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII KLSFTSLGKT NGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..506] PSI-BLAST 1000.0 Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain
    2 View Details [507..581] deduced N/A No confident structure predictions are available.
    3 View Details [582..713] MSA 6.212996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.122769147009 bayes_pls_golite062009
  • RNA binding
    		•  1.07207584601969 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.92178707322923 bayes_pls_golite062009
  • polynucleotide adenylyltransferase activity
    		•  0.911825870004661 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.667889614569279 bayes_pls_golite062009
  • transferase activity
    		•  0.63270331673446 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.52

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle