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Protein Overview: gi|20197088, gi|...

General Information:
Name(s) found: gi|7487815 [NCBI NR]
gi|20197088 [NCBI NR]
gi|15227014 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • pir||T00596 hypothetical protein At2g02680 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20197088|gb|AAM14910.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15227014|ref|NP_178371.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 649 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLFGEFRKV EIDGKPFLVY HKVMKPLPQI HTPNSSDEET TIEKPLSIQN EETSSDEETI  60
   61 DSGDNLPLPL LFACPIVRLT STVIIDNITL QDDQGKSVEH FFNLKTSPFH GDNTSVDHDP 120
  121 VLPLFWCNNK EADPENDCVI CRAEKVGTDY YYCVECDMRY HKECVESPLR INYPSHANHS 180
  181 FQLYSSKKRF KYCIMCRKKV NGLVYYCALC DMYMHTLCAQ AVIPFFIDQP KRHAHILTLF 240
  241 PRQASLTCNI CGVLDELHFT YVCPICDFVT HADCIYIPQT IRISRHHHCI SFTSSLLKGK 300
  301 WSCGVCRQEV DRKYGAYTCN ACNGYTVHTR CALRNDIWDG KELEGVQEDE EVEPPFKRIS 360
  361 DGIILHFSHG CQMELETSGV HVGGNKFCQA CALPINEENF YICVECDFIL HETCAEAPQK 420
  421 KFHPLHPHAL QQKVVHENDL FLCDACDRLC NGFGYECTFE DCDYILDVVC ASASEPFNYQ 480
  481 GHQHPLFLAL RPNVKPMCHI CKSTKENQVL NCIEGDFIIC FECATLPYVI RYKHDDHYLT 540
  541 LCHGEEASDS DWCELCEGKL STGGEKGFYK CDDCCTTLHI NCLLGPNPFL KPGQTFTLGR 600
  601 NEFLVIRNNS PRPICGTCNM RRPYPVMFFW ESDHRSITKP KEKSSKTLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..176] FFAS03 1.29 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    2 View Details [177..231] PSI-BLAST 3.69897 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    3 View Details [232..286] PSI-BLAST 4.69897 NMR STRUCTURE OF A PROTEIN KINASE C-G PHORBOL-BINDING DOMAIN, MINIMIZED AVERAGE STRUCTURE
    4 View Details [287..418] MSA 1.163994 View MSA. No confident structure predictions are available.
    5 View Details [419..508] deduced N/A No confident structure predictions are available.
    6 View Details [509..649] FFAS03 2.1 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle