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Protein Overview: gi|7485039, gi|2...

General Information:
Name(s) found: gi|7485039 [NCBI NR]
gi|7268130 [NCBI NR]
gi|2244781 [NCBI NR]
gi|15236456 [NCBI NR]
Description(s) found:
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  • pir||B71404 hypothetical protein - Arabidopsis thaliana [NCBI NR]
  • gi|7268130|emb|CAB78467.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|2244781|emb|CAB10204.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15236456|ref|NP_193161.1| UBX domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (O23283) Hypothetical protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|2244781|emb|CAB10204.1| hypothetical protein [Arabidopsis thaliana]gi|7485039|pir||B71404 hypothetical protein - Arabidopsis thalianagi|15236456|ref|NP_193161.1| UBX domain-containing protein [Arabidopsis t [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 UBX domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 724 amino acids

    Gene Ontology:
    Cellular Component: ribosome [IEA]
    intracellular [IEA]
    Biological Process: translation [IEA]
    Molecular Function: structural constituent of ribosome [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METATRTHQQ RKLISSFLDI TVNQTVEIAT QFLEATTWNL EDAINLFLIA RRNPHHHHGE  60
   61 ELVPLPLPSK KNTLYDYDPF MSHNTSVAVC PEEIWDDEST SEESDSRLSS LYRPPPSLFF 120
  121 HGSFEDAKAT SSREDLWLLV YDDTSEGQKI STFYKIDSVP PVVLLIDPIT GQKMRMWSGV 180
  181 IEPQGFLEDL MKYMDSGPHE HVASLTSNKR MKTEKISCSS NNADDQDMAT FWGNAIEEEK 240
  241 TVIKSGKEET FTSDRVVAPS WGPEFEDIMT LSEHEEETCL SCDLLEFPVL TEEPKADCDR 300
  301 SVVCSICVRF PDGRRKQRKF LKSEPIQLLW SFCYSHMEES EKKEFKLVQA IPGASKTLDY 360
  361 GAKATFVQSG IANSMISVTW DINLPLDSKK TVLSGCRVMI GQIASSGLTK KLMIKRNMWA 420
  421 KVRGVAMMNP VEHPHGGRTE LGSHILNRDV WANDAVSRTI ESHFIVWQVY DDTNEGQKIS 480
  481 SFYKIEAPPP VVFVINPITG QKMHMWSGVI EAESIVEDLM MFWDAGPHEN IASLTRNRRT 540
  541 ETAETCLSSY NFYETPAPSW GEEFEEEDNW SSRSNNNQVV APTWEKELEE QDEWEIWSSR 600
  601 SDTDDFVPPF MGDEYEDPDE VKEEEICLVF PVLTEEPKGD CDRSVVCSLC VRFPDGRRKQ 660
  661 RKFLKSEPIQ LLWSFCYSHI DESEKKAFKL VQAIPGASKT LDCEADATFD QSGLANSLIS 720
  721 VTWE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] PSI-BLAST 8.221849 No description for 2damA was found.
    2 View Details [81..219] PSI-BLAST 17.69897 No description for 2dlxA was found.
    3 View Details [220..452] PSI-BLAST 64.30103 No description for 1vsaB was found.
    4 View Details [453..574] FFAS03 1.96 No description for 2dlxA was found.
    5 View Details [575..724] PSI-BLAST 25.30103 Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.142133664747919 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle