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Protein Overview: gi|15217540, gi|...

General Information:
Name(s) found: gi|25403189 [NCBI NR]
gi|15217540 [NCBI NR]
gi|12322392 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • pir||G86457 unknown protein, 42586-33527 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15217540|ref|NP_174607.1| SAR1 (suppressor of auxin resistance1) [Arabidopsis thaliana] [NCBI NR]
  • gi|12322392|gb|AAG51224.1|AC051630_21 unknown protein; 42586-33527 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1459 amino acids

    Gene Ontology:
    Cellular Component: nuclear membrane [IDA]
    Biological Process: mRNA export from nucleus [IGI]
    response to auxin stimulus [IGI]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENRRNPSA GMEVPVAGGG NVVKWIEISV PSPSVSSSSI GANSSEDNEC VQLPLSEDYA  60
   61 SSSVIGEPSI SFVWRINKTS PNALELLQLS AKSGFPITGL RFVFAQTLSP FAFVYADEGG 120
  121 DSGRLVYFLY SLTPSGVVYV LKLSNTLAYK SGSVFPLDHL IHLDVRPYLN ESRVTSVAAS 180
  181 PGFIFLGRSD GCVSCFQPIV YFQKSSGFHQ ELRDDTGFGR LGTVVAAVQD LFISEVHGRN 240
  241 YLCVLHADGA LRVWDILTYS RVLCQSIAAK NLEGVMCVRL WLGKADYDSG IIPLAVLYRK 300
  301 SMNDSMDVIT VYGLHFSSAE GIALSLDSGL QNIPLEEGEL RDVRFTSDKI WTLKANELTS 360
  361 YMLCQKSSTM EAQSYTLQED YISEQLFLSS RSSSHDLLLT THSLFSSAKD QIMGFISSIF 420
  421 LRRLLCPGIF HNVALRLTLL DHNKNWTDSE FQSLSLDELT SEILLLVEHE SDVIGLVRNN 480
  481 SVSLFFRLEN AEHSLGGSSS EHSNLTSLDL GVSHSDHEIL AEVLRCTSKI SKQWGGAPYA 540
  541 MYYESITGRP IISSDEIVPR LVNILESGYS TTIGQRTWSD LGADRAWEKE LEAHKNLRTF 600
  601 SIDMLLSLSA LCQRAGSWEK VFTIMEHYLQ YLVPKKSMQK NDGEALSDIC SSILVQATSQ 660
  661 FVKVMFESAF DIFLLISYLL NIAGQVNMSQ QDICKLRLEL LPMIQDIVSE WLIILFFVTT 720
  721 PAESTSMEDF SLKLSSLQID SSIDKRSWNA MLGKCGFSLA FILLFSDRSC IVDGRFNLRY 780
  781 LPSSQIITSL VQNFISWIRY SKTGDDSSSL LRRSTELSLR LIRNGQSDAV ERILVVVEAS 840
  841 LRGEKTFGCS QDTSGDWCLL QHLRGCCLLD QVQRGASGIL RERKIIDAIR CFFRASSGEG 900
  901 SWKALHSLSK EAGFSPATTG PSILDGSTSS AAWKLHYYEW AMQIFERYNI SEGACQFAYA 960
  961 ALEQVDDAYN FIEMTEEFDP TKAATYTRGR LWANVFKFTL DLNLLNDAYC AIISNPDEEI1020
 1021 KRICLRRFII VLFECGKTKI LSDGHLPFIG LTEKITQELF WKAGRSDIMM KPNPYKLLYA1080
 1081 YEMRRHNWRM AASYMYQFSA RLRSEGACKD YKHMSLVLQE RLNGLSAAMN ALALVHPGYA1140
 1141 WIDPVPEETT RYPVKKARRA EEEQLRSNDQ PKGEKSCIDI EKLQNEFVFT TAEYMLSLKN1200
 1201 FGWTYSGLEK PPSDLVDLLV QANLYDMAFT VVLKFWRGSA LKRELEKIFE NMAIKCCPAK1260
 1261 GTLWSSPNLM LTSNDEEVTH SPDRSPADQG SKLAGDWEIL EVYLKRYIDI HARLPVSVAS1320
 1321 TLLQADSCIE LPLWLIQMFK DGQKEKALGM AGQEASPASL FQLYVDYGRL TEATNLLLEY1380
 1381 MESFASSKPA EVLKRKKVSG VWFPYTTVER LWWELEKTMN SGRMVEQCHK LKEQLHHALL1440
 1441 NHLKLLKVDS NDAVSSATG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] MSA 1.031991 View MSA. No confident structure predictions are available.
    2 View Details [181..382] deduced N/A No confident structure predictions are available.
    3 View Details [383..568] deduced N/A No confident structure predictions are available.
    4 View Details [569..773] deduced N/A No confident structure predictions are available.
    5 View Details [774..974] deduced N/A No confident structure predictions are available.
    6 View Details [975..1172] deduced N/A No confident structure predictions are available.
    7 View Details [1173..1290] MSA 1.024979 View MSA. No confident structure predictions are available.
    8 View Details [1291..1459] MSA 1.019956 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle