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Protein Overview: gi|18416843, gi|...

General Information:
Name(s) found: gi|18416843 [NCBI NR]
gi|14586365 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • ref|NP_568268.1| zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14586365|emb|CAC42896.1| putative protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1062 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: NONE FOUND
    Molecular Function: zinc ion binding [IEA][ISS]
    chromatin binding [ISS]
    Ran GTPase binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDLSRAGP VERDIEQAII ALKKGAYLLK YGRRGKPKFC PFRLSNDETV LIWFSGNEEK  60
   61 HLKLSHVSRI ISGQRTRYPR PEKEYQSFSL IYSERSLDVD KDEAEVWFTG LKALISHCHQ 120
  121 RNRRTESRSD GTPSEANSPR TYTRRSSPLH SPFSSNDSLQ KDGSNHLRIH SPFESPPKNG 180
  181 LDKAFSDMAL YAVPPKGFYP SDSATISVHS GGSDSMHGHM RGMGMDAFRV SMSSAVSSSS 240
  241 HGSGHDDGDA LGDVFIWGEG IGEGVLGGGN RRVGSSFDIK MDSLLPKALE STIVLDVQNI 300
  301 ACGGQHAVLV TKQGESFSWG EESEGRLGHG VDSNIQQPKL IDALNTTNIE LVACGEFHSC 360
  361 AVTLSGDLYT WGKGDFGVLG HGNEVSHWVP KRVNFLLEGI HVSSIACGPY HTAVVTSAGQ 420
  421 LFTFGDGTFG VLGHGDKKSV FIPREVDSLK GLRTVRAACG VWHTAAVVEV MVGSSSSSNC 480
  481 SSGKLFTWGD GDKGRLGHGN KEPKLVPTCV AALVEPNFCQ VACGHSLTVA LTTSGHVYTM 540
  541 GSPVYGQLGN SHADGKTPNR VEGKLHKSFV EEIACGAYHV AVLTSRTEVY TWGKGSNGRL 600
  601 GHGDVDDRNS PTLVESLKDK QVKSIACGTN FTAAVCIHRW ASGMDQSMCS GCRQPFSFKR 660
  661 KRHNCYNCGL VFCHSCTSKK SLKACMAPNP NKPYRVCDKC FNKLKKTMET DPSSHSSLSR 720
  721 RGSINQGSDP IDKDDKFDSR SDGQLARFSL MESMRQVDSR HKKNKKYEFN SSRVSPIPSG 780
  781 SSQRGALNIA KSFNPVFGAS KKFFSASVPG SRIVSRATSP ISRRPSPPRS TTPTPTLSGL 840
  841 ATPKFVVDDT KRTNDNLSQE VVKLRSQVES LTRKAQLQEV ELERTTKQLK EALAITNEET 900
  901 TRCKAAKEVI KSLTAQLKDM AERLPVGSAR TVKSPPSLNS FGSSPGRIDP FNILNQANSQ 960
  961 ESEPNGITTP MFSNGTMTPA FGNGEATNEA RNEKEWVEQD EPGVYITLTA LAGGARDLKR1020
 1021 VRFSRKRFSE IQAEQWWADN RGRVYEQYNV RMVDKASEDL PR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..234] PSI-BLAST 32.221849 beta-lactamase inhibitor protein-II, BLIP-II
    2 View Details [235..641] PSI-BLAST 79.0 Regulator of chromosome condensation RCC1
    3 View Details [642..690] PSI-BLAST 4.221849 Eea1; Eea1 homodimerisation domain
    4 View Details [691..766] deduced N/A No confident structure predictions are available.
    5 View Details [767..1062] FFAS03 1.29 No description for 2ch7B was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle