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Protein Overview: DRB1_ARATH

General Information:
Name(s) found: DRB1_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
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  • Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 419 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    [NOT]Cajal body [IDA]
    nuclear dicing body [IDA]
    Biological Process: response to abscisic acid stimulus [IMP]
    production of miRNAs involved in gene silencing by miRNA [IMP]
    mRNA cleavage involved in gene silencing by miRNA [IMP]
    response to cytokinin stimulus [IMP]
    response to auxin stimulus [IMP]
    production of ta-siRNAs involved in RNA interference [IMP]
    Molecular Function: miRNA binding [IDA]
    protein binding [IPI]
    double-stranded RNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS  60
   61 LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG LCKNLLQEYA QKMNYAIPLY 120
  121 QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN 180
  181 TQLTVLPCEK KTIQAAIPLK ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH 240
  241 CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV 300
  301 ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK 360
  361 IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC MSGLKEAAFG SVETEASHA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..173] PSI-BLAST 22.0 dsRNA-dependent protein kinase pkr
    2 View Details [174..284] MSA 1.172989 View MSA. No confident structure predictions are available.
    3 View Details [285..419] PSI-BLAST 4.0 Crystal structure of the catalytic domain of an adenosine deaminase that acts on RNA (hADAR2) bound to inositol hexakisphosphate (IHP)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.602312874472495 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle