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Protein Overview: gi|15230500, gi|...

General Information:
Name(s) found: gi|15795165 [NCBI NR]
gi|15230500 [NCBI NR]
gi|12321946 [NCBI NR]
Description(s) found:
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  • gi|15795165|dbj|BAB03153.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15230500|ref|NP_187852.1| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • gi|12321946|gb|AAG51003.1|AC069474_2 hypothetical protein; 72371-73099 [Arabidopsis thaliana] [NCBI NR]
  • (Q9LHG2) Hypothetical protein [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|12321946|gb|AAG51003.1| hypothetical protein; 72371-73099 [Arabidopsis thaliana]gi|15230500|ref|NP_187852.1| hypothetical protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 3'-5' exonuclease/ nucleic acid binding | chr3:3954702-3955430 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein; 72371-73099 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3954695-3955423 REVERSE LENGTH=242 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • DEDDy 3'-5' exonuclease domain-containing protein OS=Arabidopsis thaliana GN=T2E22.22 PE=4 SV=1 [ARATH-contam.fasta]
  • Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Arabidopsis thaliana GN=T2E22.22 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 242 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [IEA]
    Molecular Function: nucleic acid binding [IEA]
    3'-5' exonuclease activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTIRTIGS YATQQRYSVD FFGEELFVTV TPDPSVIGQW IHDVFFHNRL SSHPLVVGVG  60
   61 VQWTPSGYHP ASPPVSYRSD SSPDSYRSDS PPVFYSSDPP ADTLQLCVGN RCIIIQLRYC 120
  121 ERVPQVLRNF LADRDNTFVG IWNSQDAGKL ERSRHQLEIA ELMDLREFVS DSSGRRSMYN 180
  181 YSLEKIVEEN LGYPGVRLDR EVSMSDWRVY NLSYDQILQA SIDVYACCSL AILDHLWEEK 240
  241 NR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] MSA 1.413986 View MSA. No confident structure predictions are available.
    2 View Details [66..242] PSI-BLAST 39.0 Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle