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Protein Overview: gi|15219979, gi|...

General Information:
Name(s) found: gi|7715599 [NCBI NR]
gi|25406602 [NCBI NR]
gi|15219979 [NCBI NR]
gi|12324578 [NCBI NR]
Description(s) found:
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  • gi|7715599|gb|AAF68117.1|AC010793_12 F20B17.17 [Arabidopsis thaliana] [NCBI NR]
  • pir||D96828 hypothetical protein F19K16.28 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15219979|ref|NP_178092.1| hAT dimerisation domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12324578|gb|AAG52239.1|AC011717_7 hypothetical protein; 97951-99813 [Arabidopsis thaliana] [NCBI NR]
  • (Q9SQN5) Hypothetical protein [athaliana3702.FASTAC.txt]
  • F20B17.17 [Arabidopsis thaliana]gi|25406602|pir||D96828 hypothetical protein F19K16.28 [imported] - Arabidopsis thalianagi|12324578|gb|AAG52239.1| hypothetical protein; 97951-99813 [Arabidopsis thaliana]gi|15219979|ref|NP_178092.1| hAT dimerisation dom [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 HAT dimerisation domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | hAT dimerisation domain-containing protein | chr1:30009260-30011122 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein; 97951-99813 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • F20B17.17 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein dimerization [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 518 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: DNA binding [IEA]
    protein dimerization activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDAVAKCGP GFVAPSPKTE WLDRVKSDIS LQLKDTEKEW VTTGCTIIAE AWTDNKSRAL  60
   61 INFSVSSPSR IFFHKSVDAS SYFKNSKCLA DLFDSVIQDI GQEHIVQIIM DNSFCYTGIS 120
  121 NHLLQNYATI FVSPCASQCL NIILEEFSKV DWVNQCISQA QVISKFVYNN SPVLDLLRKL 180
  181 TGGQDIIRSG VTRSVSNFLS LQSMMKQKAR LKHMFNCPEY TTNTNKPQSI SCVNILEDND 240
  241 FWRAVEESVA ISEPILKVLR EVSTGKPAVG SIYELMSKAK ESIRTYYIMD ENKHKVFSDI 300
  301 VDTNWCEHLH SPLHAAAAFL NPSIQYNPEI KFLTSLKEDF FKVLEKLLPT SDLRRDITNQ 360
  361 IFTFTRAKGM FGCNLAMEAR DSVSPGLWWE QFGDSAPVLQ RVAIRILSQV CSGYNLERQW 420
  421 STFQQMHWER RNKIDREILN KLAYVNQNLK LGRMITLETD PIALEDIDMM SEWVEEAENP 480
  481 SPAQWLDRFG TALDGGDLNT RQFGGAIFSA NDHNIFGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..518] PSI-BLAST 33.69897 Three-dimensional structure of the Hermes DNA transposase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.722279828632226 bayes_pls_golite062009
  • hydrolase activity
    		•  0.29272620969648 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.24934115119652 bayes_pls_golite062009
  • nuclease activity
    		•  0.239989310123501 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle