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Protein Overview: gi|6561964, gi|1...

General Information:
Name(s) found: gi|6561964 [NCBI NR]
gi|15229183 [NCBI NR]
gi|11358454 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|6561964|emb|CAB62468.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15229183|ref|NP_190533.1| FAD binding / oxidoreductase [Arabidopsis thaliana] [NCBI NR]
  • pir||T46241 hypothetical protein T9C5.230 - Arabidopsis thaliana [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 519 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: tRNA processing [IEA]
    metabolic process [IEA]
    regulation of nitrogen utilization [ISS]
    oxidation reduction [IEA]
    Molecular Function: tRNA dihydrouridine synthase activity [IEA]
    catalytic activity [IEA]
    FAD binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METRIELKKK ISEIFKDFMT VITQLEELGN AANNFLLRFQ QGLSFLQRPP IVTSSKLIEN  60
   61 IIKKNETRRL KSYIEAGCIN IHDAAQSTRA YVNVAAKNLL IELERLTDEA ALAIESATQL 120
  121 DKDSSDGLQQ VTCDEENETV QLPQGPEVTE YAALIAVIYS MMKQNYVMQD KIVRSLSLKS 180
  181 SSGELETYSL MWSLRPGVFE FFVATFDGAT KKKKTKMDYQ NKLVLAPMVR VGTLSFRMLA 240
  241 AEYGADITYG EEIIDHKLVK CERRLNVASG TSEFVEKGTD NVVFSTCDEE KSRVVFQMGT 300
  301 SDAVRALKAS EIVCNDVATI DINMGCPKAF SIQGGMGAAL LSKPELIHDI LATLKRNLDV 360
  361 PVTCKIRLLK SPADTVELAR RIEKLGVPAL AVHGRKIADR PRDPAKWDEI ADVVAALSIP 420
  421 VIANGDVLEY DDFSRIKTAT GAASVMVARG AMWNASIFSP KGKSHWEDVK KKYLRKSILW 480
  481 NNDVKSTKYT IKEMIAHHSC LELPEGKSIN KADTLEDLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..129] PSI-BLAST 4.39794 Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
    2 View Details [130..204] deduced N/A No confident structure predictions are available.
    3 View Details [205..519] PSI-BLAST 53.69897 Crystal structure of a putative flavin oxidoreductase with flavin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle