YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15242400, gi|...

General Information:
Name(s) found: gi|9955525 [NCBI NR]
gi|15242400 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|9955525|emb|CAC05464.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15242400|ref|NP_196500.1| DNA-directed RNA polymerase III RPC4 family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9FY77) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|15242400|ref|NP_196500.1| DNA-directed RNA polymerase III RPC4 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA-directed RNA polymerase III RPC4 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNA-directed RNA polymerase III RPC4 family protein | chr5:2911314-2913137 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA polymerase III RPC4 | chr5:2911313-2913136 REVERSE LENGTH=272 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein T5E8_180 OS=Arabidopsis thaliana GN=T5E8_180 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 272 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase III complex [IEA]
    Biological Process: transcription from RNA polymerase III promoter [IEA]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKPPVRKM KFAPKAPPKR VPKPEVKPEV VEDNSNSAQA SELLRRVNER SLRKPKADKK  60
   61 VPASQVAWLG GVVNSTRSNK YLNRSNGAYG STSTQEIEYK EPWDYYSYYP ITLPMRRPYA 120
  121 GDPEVLDVEE FMQAGGHHED SLNTAANLGL MEDSGEQKMF FMRLPSVPLA STPTENLETR 180
  181 PNIKGPVEKK TVDLKALPEG YMGKLLVYKS GAVKMKLGEV LYDVSPGLKS EFAQDVMVVN 240
  241 TEQKNCCLVG DVYKHAVLTP DIDSILKDIE NI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] MSA 10.106996 View MSA. No confident structure predictions are available.
    2 View Details [153..272] Pfam 53.229148 No description for PF05132.5 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle