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Protein Overview: gi|12321953, gi|...

General Information:
Name(s) found: gi|15795163 [NCBI NR]
gi|15230494 [NCBI NR]
gi|12321953 [NCBI NR]
Description(s) found:
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  • gi|15795163|dbj|BAB03151.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15230494|ref|NP_187850.1| extensin family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12321953|gb|AAG51010.1|AC069474_9 hypothetical protein; 75534-76595 [Arabidopsis thaliana] [NCBI NR]
  • (Q9LHG4) Hypothetical protein [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|12321953|gb|AAG51010.1| hypothetical protein; 75534-76595 [Arabidopsis thaliana]gi|15230494|ref|NP_187850.1| extensin family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Extensin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | extensin family protein | chr3:3951206-3952267 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein; 75534-76595 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3951199-3952260 REVERSE LENGTH=353 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Extensin family protein OS=Arabidopsis thaliana GN=T2E22.24 PE=4 SV=1 [ARATH-contam.fasta]
  • Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Arabidopsis thaliana GN=T2E22.24 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 353 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [IEA]
    Molecular Function: nucleic acid binding [IEA]
    3'-5' exonuclease activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRIRSIGS YATQGKFSVD FFGDEFIVTV TSDPSVIGQW IHDVLRFSSR PLVVGVGVQW  60
   61 TPHPTSPPAR YHSPVSYHSD SSPVTHHYDS PPVCYRSDSP PAQYCSVSPP ARYSSDSPPA 120
  121 QYRSVSPPAQ YRSVSPPALY RSVSPPARYR SVSPPVRYRS DSPPAQFRSV SPPARYLSDS 180
  181 PLVRYRSVSP PARYLSVSPP ARYRSVSPPA RSDPPANTLQ LCVGNRCIII QLFYCNRVPH 240
  241 VLRRFLGDRN HTFVGFWNSQ DAGKLKRSRH RLEIAELLDL RNHVVDSRGR GLKGRSFEVV 300
  301 VGECLGYRGV RLEKAIGMSD WSVYDLSYDQ ILQASIDVYV CSKLGFRNRL WEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] FFAS03 1.04 No description for 2j63A was found.
    2 View Details [195..353] PSI-BLAST 34.09691 No description for 2e6lA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle