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Protein Overview: AHL29_ARATH

General Information:
Name(s) found: AHL29_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||H96792 unknown protein F14G6.10 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15223074|ref|NP_177776.1| SOB3 (SUPPRESSOR OF PHYB-4#3); DNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|12323978|gb|AAG51949.1|AC015450_10 unknown protein; 41834-42742 [Arabidopsis thaliana] [NCBI NR]
  • gi|119657402|tpd|FAA00300.1| TPA: AT-hook motif nuclear localized protein 29 [Arabidopsis thaliana] [NCBI NR]
  • AT-hook motif nuclear-localized protein 29 OS=Arabidopsis thaliana GN=AHL29 PE=1 SV=1 [Swiss-Prot]
  • (Q9C9K7) Hypothetical protein [athaliana3702.FASTAC.txt]
  • unknown protein; 41834-42742 [Arabidopsis thaliana]gi|25348243|pir||H96792 unknown protein F14G6.10 [imported] - Arabidopsis thalianagi|15223074|ref|NP_177776.1| DNA-binding family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA-binding family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNA-binding family protein | chr1:28710426-28711334 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein; 41834-42742 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SOB3, AHL29 | Predicted AT-hook DNA-binding family protein | chr1:28705532-28706440 FORWARD LENGTH=302 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT-hook motif nuclear localized protein 29 OS=Arabidopsis thaliana GN=F14G6.10 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 302 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: photomorphogenesis [IMP]
    Molecular Function: DNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP  60
   61 GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR SHVLEVSSGA DIVESVTTYA 120
  121 RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA 180
  181 PPGSGGLSIF LSGVQGQVIG GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG 240
  241 GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP 300
  301 AF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] deduced N/A No confident structure predictions are available.
    2 View Details [100..302] PSI-BLAST 30.221849 No description for 2nmuA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.210430303475354 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.42

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle