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Protein Overview: SETH6_ARATH

General Information:
Name(s) found: SETH6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|3738298|gb|AAC63640.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||D84920 hypothetical protein At2g47860 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20197554|gb|AAM15126.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15227149|ref|NP_182307.1| phototropic-responsive NPH3 family protein [Arabidopsis thaliana] [NCBI NR]
  • BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 [Swiss-Prot]
  • (O82253) At2g47860 protein (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|3738298|gb|AAC63640.1| unknown protein [Arabidopsis thaliana]gi|25336221|pir||D84920 hypothetical protein At2g47860 [imported] - Arabidopsis thalianagi|15227149|ref|NP_182307.1| phototropic-responsive NPH3 famil [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Phototropic-responsive NPH3 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | phototropic-responsive NPH3 family protein | chr2:19607049-19609158 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • signal transducer [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Phototropic-responsive NPH3 family protein | chr2:19599979-19602088 FORWARD LENGTH=635 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 635 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: response to light stimulus [IEA][ISS]
    Molecular Function: protein binding [IEA]
    signal transducer activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVVTVPESN KQSVAAKRAF RPSSSIRHTP QWPVSDVTSD LTIEVGSATF SLHKFPLVSR  60
   61 SGRIRKLVLE SKDTNLNLAA VPGGSESFEL AAKFCYGVGV QYNSSNIAAL RCVAHYLEMT 120
  121 EDLSEKNLEA RTEAYLKDSI FNDISNSITV LHSCERLLPV AEEINLVGRL VNAIAVNACK 180
  181 EQLASGLLKL DQSFSCGVPE TAKPCDWWGR SLPILKLDFF QRVLSAMKSK GLNHDIISDI 240
  241 LMSYARKSLQ IIREPNLVKS DSDLQRKQRI VLEAVVGLLP TQANKSSIPI SFLSSLLKTA 300
  301 IGSGTSVSCR SDLERRISHL LDQAILEDIL IPANIGAMYD TDSVQRIFSM FLNLDECEYR 360
  361 DDDDDEEDAV DESEMAMYDF EGAESPKQSS IFKVSKLMDS YLAEVALDSS LPPSKFIALA 420
  421 ELLPDHARVV CDGLYRAVDI FLKVHPHMKD SERYRLCKTV SCKKLSQDAS SHAAQNERLP 480
  481 VQIAVQVLFY EQTRLKNAMT SGGGTGGSNQ SQFFLFPNRS GSGMASGAIS PRDNYASVRR 540
  541 ENRELRLEVA RMRMRLTDLE KDHVSMKRDF VKPQSRRRRY GMLRKLSRGL NKLNAIVLRF 600
  601 RSSQSVASSG KKHTEEKTNS ERRFMFQKRR CHSVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..163] PSI-BLAST 24.39794 No description for 2if5A was found.
    2 View Details [164..231] deduced N/A No confident structure predictions are available.
    3 View Details [232..406] MSA 3.433988 View MSA. No confident structure predictions are available.
    4 View Details [407..544] MSA 6.093995 View MSA. No confident structure predictions are available.
    5 View Details [545..635] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle