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Protein Overview: gi|15240994, gi|...

General Information:
Name(s) found: gi|7327835 [NCBI NR]
gi|15240994 [NCBI NR]
Description(s) found:
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  • gi|7327835|emb|CAB82264.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15240994|ref|NP_195768.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9M026) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|15240994|ref|NP_195768.1| DC1 domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr5:192989-194230 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr5:192990-194231 FORWARD LENGTH=413 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=T10O8_190 PE=4 SV=1 [ARATH-contam.fasta]
  • Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana GN=T10O8_190 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 413 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHLDHTPSD RLLCPVERIQ KDKDGKVTTI SGGIHYIIKS SYFISNAEDE KPVHLLSLIL  60
   61 RNRKEDKVLS FTFCYVCQIA LLGEAYYVYF CSYCPNYYHK ECVESPSVFH SSDHPKHPLQ 120
  121 LLWIPDMSLE EERDKRCCSC KRGVDALFYY CSICDFAVHM ACAGNPTSPT IDNPKRHKHT 180
  181 LHYFPRKSGL FCDVCALVDD SDYLYVCLLC DFIVHKRCVY LPYVIKVSRH NHRLTFTPNL 240
  241 PYEEPTVTDC GVCHAKINEN YGEYSCTKKG CVYAVHSRCA MQSDVCDGKK LEGEPEEVYE 300
  301 DTKMFEEKGD GIIQHQSHPR HQLRLEKIFH DESHHCQACR RPSYDHGGNV YRCMQCDDFI 360
  361 FHESCAYLPR TKQFMLHVHP LTLDPSYNFI DWFQCGKCYR YSCGFRCMCS CAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..166] PSI-BLAST 9.69897 Crystal Structure of the Human Beta2-Chimaerin
    2 View Details [167..261] PSI-BLAST 5.69897 NMR STRUCTURE OF A PROTEIN KINASE C-G PHORBOL-BINDING DOMAIN, MINIMIZED AVERAGE STRUCTURE
    3 View Details [262..413] FFAS03 2.05 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle