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Protein Overview: gi|15241778, gi|...

General Information:
Name(s) found: gi|7406431 [NCBI NR]
gi|15241778 [NCBI NR]
gi|11358094 [NCBI NR]
Description(s) found:
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  • gi|7406431|emb|CAB85540.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15241778|ref|NP_195855.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T48256 hypothetical protein T1E22.110 - Arabidopsis thaliana [NCBI NR]
  • (Q9LZ90) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11358094|pir||T48256 hypothetical protein T1E22.110 - Arabidopsis thalianagi|15241778|ref|NP_195855.1| DC1 domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr5:495309-497264 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr5:495311-497266 REVERSE LENGTH=651 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=T1E22_110 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 651 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNLVGVFR EREIDGKPFH TYTLSSQTDT TTPSSYGETA IDGDDHLSLQ QPLFLCPSLR  60
   61 LRVYGENNSY TEFLPYNTSP HFPSITGVDQ QVQHLLDSDS QQVHDLLHSD NSHDDDGDEI 120
  121 CKLPVVPIYW CNSKKDEYLQ FTCGACQLSK IGTDYYICLR SDQMFHKECV ESPLEIKHPS 180
  181 YPFLSLKLYH NFSENVNCIC CDLALFSMLY HSSTYKLSMH PVCAMKPIPI LIDHPKRHPH 240
  241 LLTFFPKQAS LLCDVCGLVK ESFPTYVCVR CIFVAHRDCI YFPYVIKICR HQHRISFISS 300
  301 LPSGKWSCGV CRQKVNNNCG AYTCNKCRHY FVHTRCALRE DVWNGKDLEG VPEEPEIILE 360
  361 PFETIADGII LHFSHGHHLK LENSRVYDEN IICQACILPI YEGNYYSCMD QCDFVLHEAC 420
  421 ANASRKKDHA LHGHPLTLKV QGEDSFFCSA CCRQSCGYAY GVGSYQIDFR CASVSEPFEY 480
  481 QGHEHPLFLA LDRQQERKAT CQICQRKIAF LRKLNCIECD YVLCFICATL PYEAKYKHDK 540
  541 HFLTFREGKK GSDQLDWCEV CERNIVYSRK DGFYACDDCC TTLHVRCLLG EDMYMSKPGH 600
  601 TIMNNKREVH ILPNNTRSRP FCHHHDEDRC PYKVIFKWQD MTFCSYRCLI K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] FFAS03 2.29 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    2 View Details [184..353] PSI-BLAST 3.69897 No description for 2ysmA was found.
    3 View Details [354..538] MSA 6.161996 View MSA. No confident structure predictions are available.
    4 View Details [539..651] PSI-BLAST 4.69897 Solution Structure of The C1 Domain of The Human Diacylglycerol Kinase Delta

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle