YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SCL18_ARATH

General Information:
Name(s) found: SCL18_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|8778485|gb|AAF79493.1|AC002328_1 F20N2.1 [Arabidopsis thaliana] [NCBI NR]
  • gi|75217129|sp|Q9ZWC5.1|SCL18_ARATH RecName: Full=Scarecrow-like protein 18; Short=AtSCL18; AltName: Full=Protein LATERAL SUPPRESSOR; AltName: Full=GRAS family protein 7; Short=AtGRAS-7 [NCBI NR]
  • gi|30575370|gb|AAP20048.1| lateral suppressor [Arabidopsis thaliana] [NCBI NR]
  • gi|15222748|ref|NP_175954.1| LAS (Lateral Suppressor); transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|111074506|gb|ABH04626.1| At1g55580 [Arabidopsis thaliana] [NCBI NR]
  • Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1 [Swiss-Prot]
  • (Q9ZWC5) F20N2.1 (Lateral suppressor) [athaliana3702.FASTAC.txt]
  • lateral suppressor [Arabidopsis thaliana]gi|8778485|gb|AAF79493.1| F20N2.1 [Arabidopsis thaliana]gi|15222748|ref|NP_175954.1| scarecrow transcription factor family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Scarecrow transcription factor family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SCL18, LAS | LAS (LATERAL SUPPRESSOR); transcription factor | chr1:20767772-20769109 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g55580 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • LAS (LATERAL SUPPRESSOR); transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • lateral suppressor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • F20N2.1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LAS, SCL18 | GRAS family transcription factor | chr1:20764106-20765443 FORWARD LENGTH=445 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 445 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: regulation of transcription [TAS]
    secondary shoot formation [IMP]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA  60
   61 QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ TAETVATWTT NEMTMSNSTV 120
  121 FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH 180
  181 ILDLDISQGL QWPPLMQALA ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG 240
  241 LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA 300
  301 IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF 360
  361 GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG SFALSQAKLL LRLHYPSEGY 420
  421 NLQFLNNSLF LGWQNRPLFS VSSWK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] MSA 5.105994 View MSA. No confident structure predictions are available.
    2 View Details [107..445] FFAS03 1.01 Hypothetical protein HI0319 (YecO)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.639646908254091 bayes_pls_golite062009
  • transferase activity
    		•  0.394707018913607 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.0810339077201343 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.0737551340470768 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle