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Protein Overview: gi|29824179, gi|...

General Information:
Name(s) found: gi|4580397 [NCBI NR]
gi|29824179 [NCBI NR]
gi|25408001 [NCBI NR]
gi|15226904 [NCBI NR]
Description(s) found:
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  • gi|4580397|gb|AAD24375.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana] [NCBI NR]
  • gi|29824179|gb|AAP04050.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana] [NCBI NR]
  • pir||H84686 probable ATP-dependent RNA helicase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15226904|ref|NP_180427.1| ATP binding / ATP-dependent helicase/ nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • (Q9SIB5) Putative ATP-dependent RNA helicase [athaliana3702.FASTAC.txt]
  • putative ATP-dependent RNA helicase [Arabidopsis thaliana]gi|4580397|gb|AAD24375.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]gi|25408001|pir||H84686 probable ATP-dependent RNA helicase [imported] - Arabidopsis thalianagi|15226904|ref|N [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ATP binding / ATP-dependent helicase/ nucleic acid binding | chr2:12258922-12261749 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative ATP-dependent RNA helicase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:12251845-12254672 FORWARD LENGTH=502 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • P-loop containing nucleoside triphosphate hydrolase-like protein OS=Arabidopsis thaliana GN=At2g28600 PE=2 SV=1 [ARATH-contam.fasta]
  • DEAD/DEAH box helicase-like protein OS=Arabidopsis thaliana GN=At2g28600 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 502 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    ATP-dependent helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGDDNVQR KKNKVTRKKM SRKNDTATVS ARIAAIIAAK KRRKSGKRSM CQGMCFTLPT  60
   61 LEDPFNERQG KADITKKKKK KKKVKSREDK KPSPMSIEGV EKMDGPPKFL MLNLNEIESS 120
  121 FRKDITYSEQ HDKSLFTSSW GIEFWKCYSS GNDILDTSGM SSTVEQIAWI VSTAADAIAR 180
  181 REKDEVEEEE ELLGNSPFLL YLVPSQSKAS QVRSVCKALK GIGIHTVSLH QGAPLDHQIS 240
  241 GLKSVEPEFI VATPERLLEI VTLKGVDISN VSLLVIDELG SLCSGGYLNA VKSIKQAISS 300
  301 KHQTIVFNNS FSASIIPAVQ SFLGGSVNRV TVNESVASQG SCITQTVSVC ASEEKKLQKF 360
  361 AKHLDSSSSK LIYIVTKEES FKKIMAILKL KGISVSTSSD SKLSEVKKSR KPVAHLIDFE 420
  421 QLDTTVMRDS ETVLLPDFFP SIEIYTQILT SMARESAHGV LHSYITEKDA ASYQAGPLVN 480
  481 VLENCGQNVP DRWRNMDVAM SD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..502] PSI-BLAST 85.69897 No description for 2db3A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle