YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: ALFL6_ARATH

General Information:
Name(s) found: ALFL6_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|28827386|gb|AAO50537.1| putative PHD-type zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28393037|gb|AAO41953.1| putative PHD-type zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • pir||A84437 probable PHD-type zinc finger protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20197338|gb|AAM15031.1| putative PHD-type zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15226967|ref|NP_178351.1| AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding [Arabidopsis thaliana] [NCBI NR]
  • PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana GN=AL6 PE=2 SV=1 [Swiss-Prot]
  • (Q8S8M9) Putative PHD-type zinc finger protein [athaliana3702.FASTAC.txt]
  • putative PHD-type zinc finger protein [Arabidopsis thaliana]gi|28393037|gb|AAO41953.1| putative PHD-type zinc finger protein [Arabidopsis thaliana]gi|20197338|gb|AAM15031.1| putative PHD-type zinc finger protein [Arabidopsis thaliana]gi|25346628|pir||A [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 PHD finger family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | PHD finger family protein | chr2:652836-654620 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative PHD-type zinc finger protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AL6 | alfin-like 6 | chr2:652837-654621 FORWARD LENGTH=256 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 256 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [ISS]
    methylated histone residue binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV  60
   61 NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS WLLSVAFYFG ARFGFGKNER 120
  121 KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP 180
  181 KEEEEEEDES EDESEDDEQG AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH 240
  241 IKHYKCPTCS NKRARP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..195] MSA 2.586997 View MSA. No confident structure predictions are available.
    2 View Details [196..256] PSI-BLAST 14.522879 No description for 2f6jA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle