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Protein Overview: TIC40_ARATH

General Information:
Name(s) found: TIC40_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79327976|ref|NP_001031893.1| PDE120 (PIGMENT DEFECTIVE EMBRYO); heme binding [Arabidopsis thaliana] [NCBI NR]
  • gi|30387547|gb|AAP31939.1| At5g16620 [Arabidopsis thaliana] [NCBI NR]
  • gi|20260222|gb|AAM13009.1| translocon Tic40-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|16226313|gb|AAL16131.1|AF428299_1 AT5g16620/MTG13_6 [Arabidopsis thaliana] [NCBI NR]
  • gi|15237382|ref|NP_197165.1| TIC40 [Arabidopsis thaliana] [NCBI NR]
  • gi|10176971|dbj|BAB10189.1| translocon Tic40-like protein [Arabidopsis thaliana] [NCBI NR]
  • Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1 SV=1 [Swiss-Prot]
  • (Q9FMD5) Translocon Tic40-like protein (AT5g16620/MTG13_6) (At5g16620) [athaliana3702.FASTAC.txt]
  • At5g16620 [Arabidopsis thaliana]gi|20260222|gb|AAM13009.1| translocon Tic40-like protein [Arabidopsis thaliana]gi|16226313|gb|AAL16131.1| AT5g16620/MTG13_6 [Arabidopsis thaliana]gi|10176971|dbj|BAB10189.1| translocon Tic40-like protein [Arabidopsis tha [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Hydroxyproline-rich glycoprotein family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: TIC40, ATTIC40, PDE120 | PDE120 (PIGMENT DEFECTIVE EMBRYO) | chr5:5450811-5454259 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • translocon Tic40-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • PDE120 (PIGMENT DEFECTIVE EMBRYO) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g16620 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g16620/MTG13_6 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PDE120, TIC40, ATTIC40 | hydroxyproline-rich glycoprotein family protein | chr5:5450808-5454256 FORWARD LENGTH=447 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 447 amino acids

    Gene Ontology:
    Cellular Component: chloroplast inner membrane [IDA]
    chloroplast [IDA]
    membrane [IDA]
    chloroplast envelope [IDA]
    Tic complex [TAS]
    chloroplast thylakoid membrane [IDA]
    Biological Process: protein import into chloroplast stroma [IMP]
    chloroplast organization [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE  60
   61 NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP SSSTIGSPLF WIGVGVGLSA 120
  121 LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS 180
  181 QSQSSGATVD VTATKVETPP STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP 240
  241 EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS 300
  301 VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR 360
  361 MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA MAFQNPRVQA ALMECSENPM 420
  421 NIMKYQNDKE VMDVFNKISQ LFPGMTG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] MSA 4.159994 View MSA. No confident structure predictions are available.
    2 View Details [197..447] FFAS03 1.24 FKBP51, C-terminal domain; FKBP51, N-terminal domains


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.33

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle