YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: HMGB5_ARATH

General Information:
Name(s) found: HMGB5_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 125 amino acids

    Gene Ontology:
    Cellular Component: chromatin [TAS]
    Biological Process: chromatin assembly or disassembly [TAS]
    Molecular Function: DNA binding [IDA][ISS]
    transcription factor activity [ISS]
    structural constituent of chromatin [TAS]
    chromatin binding [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDNQTEVES RSTDDRLKVR GNKVGKKTKD PNRPKKPPSP FFVFLDDFRK EFNLANPDNK  60
   61 SVGNVGRAAG KKWKTMTEEE RAPFVAKSQS KKTEYAVTMQ QYNMELANGN KTTGDDEKQE 120
  121 KAADD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] PSI-BLAST 16.69897 No description for 2gzkA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.927928103499335 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.38664561645052 bayes_pls_golite062009
  • DNA binding
    		•  0.37554038880732 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle