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Protein Overview: SSY2_ARATH

General Information:
Name(s) found: SSY2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6714470|gb|AAF26156.1|AC008261_13 putative glycogen synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|27311899|gb|AAO00915.1| putative glycogen synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|15450775|gb|AAK96659.1| putative glycogen synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|15232051|ref|NP_186767.1| AtSS2 (starch synthase 2); transferase, transferring glycosyl groups [Arabidopsis thaliana] [NCBI NR]
  • Starch synthase 2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS2 PE=1 SV=1 [Swiss-Prot]
  • (Q9MAC8) Putative glycogen synthase [athaliana3702.FASTAC.txt]
  • putative glycogen synthase [Arabidopsis thaliana]gi|27311899|gb|AAO00915.1| putative glycogen synthase [Arabidopsis thaliana]gi|15450775|gb|AAK96659.1| putative glycogen synthase [Arabidopsis thaliana]gi|15232051|ref|NP_186767.1| glycogen synthase, put [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycogen synthase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATSS2 | ATSS2 (STARCH SYNTHASE 2); transferase, transferring glycosyl groups | chr3:62463-65685 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • transferase, transferring glycosyl groups [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative glycogen synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AtSS2, SS2 | starch synthase 2 | chr3:62456-65678 REVERSE LENGTH=792 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Starch synthase 2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 792 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: glucan biosynthetic process [IEA]
    biosynthetic process [IEA]
    Molecular Function: transferase activity, transferring glycosyl groups [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV  60
   61 EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK LVSSIKESTP DLDDAKASSK 120
  121 QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS 180
  181 ASVISSSPVT SPQKPSDVAT NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS 240
  241 KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV 300
  301 MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK 360
  361 VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR LDILKRMVLF CKAAVEVPWY 420
  421 VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD 480
  481 DFSYVDLPSH YLDSFKLYDP VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH 540
  541 NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL 600
  601 PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR 660
  661 DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA MNYGTIPVVH AVGGLRDTVQ 720
  721 QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK 780
  781 YEEVLVAAKY HW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..197] PSI-BLAST 28.0 RBP1
    2 View Details [198..297] FFAS03 1.51 No description for 2j63A was found.
    3 View Details [298..792] PSI-BLAST 88.39794 Crystal structure of the glycogen synthase from A. tumefaciens in complex with ADP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • glycogen phosphorylase activity
    		•  3.34851380039572 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  3.04530122157712 bayes_pls_golite062009
  • catalytic activity
    		•  3.02192459767177 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  2.94500176353224 bayes_pls_golite062009
  • phosphorylase activity
    		•  2.90311878311075 bayes_pls_golite062009
  • glycogen (starch) synthase activity
    		•  2.05207088363955 bayes_pls_golite062009
  • glucosyltransferase activity
    		•  1.8062586862583 bayes_pls_golite062009
  • transferase activity
    		•  1.67770954408305 bayes_pls_golite062009
  • UDP-N-acetylglucosamine 2-epimerase activity
    		•  1.63103907245982 bayes_pls_golite062009
  • lipopolysaccharide heptosyltransferase activity
    		•  1.555502709955 bayes_pls_golite062009
  • UDP-glucosyltransferase activity
    		•  1.4199532885636 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  1.30934991061674 bayes_pls_golite062009
  • starch synthase activity
    		•  1.073959209177 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.27693350081385 bayes_pls_golite062009
  • alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
    		•  0.22009679964126 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle